Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000021072
NCBI Reference Sequence	XM_002130178.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg002n24

Plate: R1CiGC15d08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
XPG-I_dom	SMART	XPG-I domain
Exo1	PANTHER	Exonuclease 1
XPG_DNA_repair_N	SMART	XPG N-terminal
XPG-I_dom	Pfam	XPG-I domain
HhH2	SMART	Helix-hairpin-helix motif, class 2
XPG_CS	ProSitePatterns	XPG conserved site
XPG/Rad2	PANTHER	XPG/Rad2 endonuclease
XPG_DNA_repair_N	Pfam	XPG N-terminal
EXO1_H3TH	CDD	Exonuclease-1, H3TH domain
PIN-like_dom_sf	SUPERFAMILY	PIN-like domain superfamily
5-3_exonuclease_C_sf	SUPERFAMILY	5'-3' exonuclease, C-terminal domain superfamily
XPG/Rad2	PRINTS	XPG/Rad2 endonuclease

GOSlim

29 results

GO Term	Annotation Origin	Type
magnesium ion binding	Blast	molecular function
immune system process	Orthology	biological process
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
double-stranded DNA binding	Blast	molecular function
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
mitochondrion	Blast	cellular component
centrosome	Blast	cellular component
plasma membrane	Orthology	cellular component
DNA replication	Orthology	biological process
DNA repair	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
membrane	Blast	cellular component
nuclear body	Orthology	cellular component
hydrolase activity	Orthology	molecular function
macromolecular complex	Blast	cellular component
metal ion binding	Orthology	molecular function
extracellular exosome	Blast	cellular component
DNA metabolic process	Orthology	biological process
RNA metabolic process	Orthology	biological process
system development	Orthology	biological process
immune response	Orthology	biological process
reproductive process	Orthology	biological process
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component

GO (Orthology)

33 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
DNA synthesis involved in DNA repair	Hs	biological process
strand displacement	Hs	biological process
immune system process	Hs	biological process
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
catalytic activity	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
RNA-DNA hybrid ribonuclease activity	Hs	molecular function
exonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
plasma membrane	Hs	cellular component
DNA replication	Hs	biological process
DNA repair	Hs	biological process
mismatch repair	Hs	biological process
DNA recombination	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
5'-3' exonuclease activity	Hs	molecular function
somatic hypermutation of immunoglobulin genes	Hs	biological process
nuclear body	Hs	cellular component
hydrolase activity	Hs	molecular function
hydrolase activity, acting on ester bonds	Hs	molecular function
5'-3' exodeoxyribonuclease activity	Hs	molecular function
single-stranded DNA 5'-3' exodeoxyribonuclease activity	Hs	molecular function
isotype switching	Hs	biological process
metal ion binding	Hs	molecular function
flap endonuclease activity	Hs	molecular function
meiotic cell cycle	Hs	biological process
double-stranded DNA 5'-3' exodeoxyribonuclease activity	Hs	molecular function
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process

GO (Blast)

34 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
magnesium ion binding	Hs	molecular function	88.2	1.38e-18
nuclear chromosome, telomeric region	Hs	cellular component	88.2	1.38e-18
DNA binding	Hs	molecular function	419	4.49e-135
chromatin binding	Hs	molecular function	419	4.49e-135
damaged DNA binding	Hs	molecular function	88.2	1.38e-18
double-stranded DNA binding	Hs	molecular function	88.2	1.38e-18
catalytic activity	Hs	molecular function	419	4.49e-135
nuclease activity	Hs	molecular function	419	4.49e-135
endonuclease activity	Hs	molecular function	419	4.49e-135
endodeoxyribonuclease activity	Hs	molecular function	68.6	9.16e-12
RNA-DNA hybrid ribonuclease activity	Hs	molecular function	419	4.49e-135
exonuclease activity	Hs	molecular function	419	4.49e-135
protein binding	Hs	molecular function	419	4.49e-135
nucleus	Hs	cellular component	419	4.49e-135
nucleoplasm	Hs	cellular component	419	4.49e-135
nucleolus	Hs	cellular component	88.2	1.38e-18
mitochondrion	Hs	cellular component	88.2	1.38e-18
centrosome	Hs	cellular component	68.6	9.16e-12
plasma membrane	Hs	cellular component	419	4.49e-135
double-stranded DNA exodeoxyribonuclease activity	Hs	molecular function	88.2	1.38e-18
5'-3' exonuclease activity	Hs	molecular function	419	4.49e-135
crossover junction endodeoxyribonuclease activity	Hs	molecular function	68.6	9.16e-12
membrane	Hs	cellular component	88.2	1.38e-18
nuclear body	Hs	cellular component	419	4.49e-135
hydrolase activity	Hs	molecular function	419	4.49e-135
hydrolase activity, acting on ester bonds	Hs	molecular function	419	4.49e-135
5'-flap endonuclease activity	Hs	molecular function	88.2	1.38e-18
macromolecular complex	Hs	cellular component	88.2	1.38e-18
5'-3' exodeoxyribonuclease activity	Hs	molecular function	419	4.49e-135
single-stranded DNA 5'-3' exodeoxyribonuclease activity	Hs	molecular function	419	4.49e-135
metal ion binding	Hs	molecular function	419	4.49e-135
flap endonuclease activity	Hs	molecular function	419	4.49e-135
double-stranded DNA 5'-3' exodeoxyribonuclease activity	Hs	molecular function	419	4.49e-135
extracellular exosome	Hs	cellular component	68.6	9.16e-12

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
DNA binding	CDD	molecular function	4.92388E-26
catalytic activity	SMART	molecular function	1.2E-7
nuclease activity	PANTHER	molecular function	2.6E-146
DNA repair	PANTHER	biological process	2.6E-146
hydrolase activity, acting on ester bonds	ProSitePatterns	molecular function
5'-3' exodeoxyribonuclease activity	PANTHER	molecular function	2.6E-146

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences