Aniseed - Gene card

Gene Card

Best human hits

MRTO4; RPLP0

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002024

Gene Model ID

KH2012:KH.C11.21

Location

KhC11:4986945..4991212

Transcript Models and Sequences

KH2012:KH.C11.21.v1.A.nonSL4-1
KH2012:KH.C11.21.v2.A.nonSL2-2
KH2012:KH.C11.21.v2.A.nonSL3-2
KH2012:KH.C11.21.v3.A.nonSL2-1
KH2012:KH.C11.21.v4.A.ND5-1
KH2012:KH.C11.21.v4.A.nonSL7-1
KH2012:KH.C11.21.v5.A.SL1-2
KH2012:KH.C11.21.v6.A.ND6-1
KH2012:KH.C11.21.v7.A.nonSL2-1
KH2012:KH.C11.21.v7.A.nonSL3-1
KH2012:KH.C11.21.v7.A.nonSL4-1
KH2012:KH.C11.21.v8.A.nonSL4-2
KH2012:KH.C11.21.v9.A.SL1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000000723
NCBI Reference Sequence	XM_002128855.4
NCBI Reference Sequence	XM_009861994.1
NCBI Reference Sequence	XM_018813975.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

4 results

cits041c15

Plate: R1CiGC35o21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
L10E_eukaryotes	PIRSF	60S acidic ribosomal protein P0
Ribosomal_L10P	Pfam	Ribosomal protein L10P

GOSlim

21 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
viral process	Hs	biological process
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
cytoplasmic ribonucleoprotein granule	Hs	cellular component
ribosome biogenesis	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	434	1.67e-154
structural constituent of ribosome	Hs	molecular function	434	1.67e-154
protein binding	Hs	molecular function	434	1.67e-154
intracellular	Hs	cellular component	434	1.67e-154
nucleus	Hs	cellular component	434	1.67e-154
nucleolus	Hs	cellular component	58.5	6.26e-10
cytoplasm	Hs	cellular component	434	1.67e-154
endoplasmic reticulum	Hs	cellular component	434	1.67e-154
cytosol	Hs	cellular component	434	1.67e-154
ribosome	Hs	cellular component	434	1.67e-154
focal adhesion	Hs	cellular component	434	1.67e-154
membrane	Hs	cellular component	434	1.67e-154
cytosolic large ribosomal subunit	Hs	cellular component	434	1.67e-154
intracellular ribonucleoprotein complex	Hs	cellular component	434	1.67e-154
cytoplasmic ribonucleoprotein granule	Hs	cellular component	434	1.67e-154
extracellular exosome	Hs	cellular component	434	1.67e-154

GO (InterProScan)