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Gene Card

Best human hits

SPECC1; SPECC1L; SPECC1L-ADORA2A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002033

Gene Model ID

KH2012:KH.C11.218

Location

KhC11:1181524..1205171

Transcript Models and Sequences

  KH2012:KH.C11.218.v1.A.SL1-1
KH2012:KH.C11.218.v2.A.SL2-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000017986
NCBI Reference Sequence XM_002130182.4
NCBI Reference Sequence XM_018814095.1
NCBI Reference Sequence XM_018814096.1
NCBI Reference Sequence XM_018814097.1
Collections

Gateway full ORF

2 results

cien141762

Plate: VES92_B11

cien195564

Plate: VES100_E16

Gene collection 1 (N. Satoh)

1 result

cieg021i06

Plate: R1CiGC18j04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
CH-domain CDD Calponin homology domain
CH-domain SMART Calponin homology domain
CH_dom_sf Gene3D CH domain superfamily
CH_dom_sf SUPERFAMILY CH domain superfamily
CH-domain ProSiteProfiles Calponin homology domain
CH-domain Pfam Calponin homology domain

GOSlim

9 results

GO Term Annotation Origin Type
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
membrane Blast cellular component
cell junction Blast cellular component
cytoskeletal part Blast cellular component
microtubule cytoskeleton Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 476 1.31e-150
nucleus Hs cellular component 351 1.80e-104
cytoplasm Hs cellular component 476 1.31e-150
spindle Hs cellular component 476 1.31e-150
cytosol Hs cellular component 476 1.31e-150
cytoskeleton Hs cellular component 476 1.31e-150
gap junction Hs cellular component 476 1.31e-150
actin cytoskeleton Hs cellular component 476 1.31e-150
membrane Hs cellular component 351 1.80e-104
cell junction Hs cellular component 476 1.31e-150

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding CDD molecular function 1.6511E-20

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