Aniseed - Gene card

GENE CARD

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Gene Card

Best human hits

ACTA1; ACTC1; ACTR2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002035

Gene Model ID

KH2012:KH.C11.22

Location

KhC11:5136980..5140106

Transcript Models and Sequences

KH2012:KH.C11.22.v1.R.ND2-1
KH2012:KH.C11.22.v2.A.nonSL34-1
KH2012:KH.C11.22.v2.A.nonSL36-1
KH2012:KH.C11.22.v2.A.nonSL5-1
KH2012:KH.C11.22.v2.A.SL1-1
KH2012:KH.C11.22.v3.A.nonSL10-1
KH2012:KH.C11.22.v3.A.nonSL11-1
KH2012:KH.C11.22.v3.A.nonSL12-1
KH2012:KH.C11.22.v3.A.nonSL13-1
KH2012:KH.C11.22.v3.A.nonSL14-1
KH2012:KH.C11.22.v3.A.nonSL16-1
KH2012:KH.C11.22.v3.A.nonSL17-1
KH2012:KH.C11.22.v3.A.nonSL18-1
KH2012:KH.C11.22.v3.A.nonSL19-1
KH2012:KH.C11.22.v3.A.nonSL20-1
KH2012:KH.C11.22.v3.A.nonSL21-1
KH2012:KH.C11.22.v3.A.nonSL22-1
KH2012:KH.C11.22.v3.A.nonSL24-1
KH2012:KH.C11.22.v3.A.nonSL25-1
KH2012:KH.C11.22.v3.A.nonSL26-1
KH2012:KH.C11.22.v3.A.nonSL27-1
KH2012:KH.C11.22.v3.A.nonSL28-1
KH2012:KH.C11.22.v3.A.nonSL29-1
KH2012:KH.C11.22.v3.A.nonSL30-1
KH2012:KH.C11.22.v3.A.nonSL3-1
KH2012:KH.C11.22.v3.A.nonSL31-1
KH2012:KH.C11.22.v3.A.nonSL32-1
KH2012:KH.C11.22.v3.A.nonSL33-1
KH2012:KH.C11.22.v3.A.nonSL35-1
KH2012:KH.C11.22.v3.A.nonSL37-1
KH2012:KH.C11.22.v3.A.nonSL38-1
KH2012:KH.C11.22.v3.A.nonSL39-1
KH2012:KH.C11.22.v3.A.nonSL40-1
KH2012:KH.C11.22.v3.A.nonSL4-1
KH2012:KH.C11.22.v3.A.nonSL41-1
KH2012:KH.C11.22.v3.A.nonSL42-1
KH2012:KH.C11.22.v3.A.nonSL6-1
KH2012:KH.C11.22.v3.A.nonSL7-1
KH2012:KH.C11.22.v3.A.nonSL8-1
KH2012:KH.C11.22.v3.A.nonSL9-1
KH2012:KH.C11.22.v3.A.SL15-1
KH2012:KH.C11.22.v3.A.SL23-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000025000

Collections

Gateway full ORF

2 results

cima872685

Plate: VES67_M02

cima881519

Plate: VES68_B24

Gene collection 1 (N. Satoh)

1 result

ciad048f10

Plate: R1CiGC05m15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Actin	Pfam	Actin family
Actin	SMART	Actin family
Actin/actin-like_CS	ProSitePatterns	Actin/actin-like conserved site
Arp2	PANTHER	Actin-related protein 2
Actin	PANTHER	Actin family
Actin	PRINTS	Actin family

GOSlim

38 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
actin binding	Blast	molecular function
protein binding	Blast	molecular function
ATP binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
focal adhesion	Blast	cellular component
cytoskeletal protein binding	Blast	molecular function
membrane	Blast	cellular component
lamellipodium	Blast	cellular component
cell projection	Blast	cellular component
cell body	Blast	cellular component
actin filament binding	Blast	molecular function
extracellular exosome	Blast	cellular component
cytoskeletal part	Blast	cellular component
organelle organization	Blast	biological process
structural molecule activity	Blast	molecular function
cytoplasmic part	Blast	cellular component
macromolecular complex	Blast	cellular component
cell periphery	Blast	cellular component
organelle	Blast	cellular component
postsynapse	Blast	cellular component
neuron part	Blast	cellular component
nucleoside-triphosphatase activity	Blast	molecular function
organelle part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
plasma membrane region	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
lysosome	Blast	cellular component
vacuolar part	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component
anion binding	Blast	molecular function
adenyl ribonucleotide binding	Blast	molecular function
intracellular organelle part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

38 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	401	4.20e-141
stress fiber	Hs	cellular component	235	2.64e-76
actin binding	Hs	molecular function	401	4.20e-141
structural constituent of cytoskeleton	Hs	molecular function	401	4.20e-141
protein binding	Hs	molecular function	235	2.64e-76
ATP binding	Hs	molecular function	401	4.20e-141
extracellular region	Hs	cellular component	401	4.20e-141
extracellular space	Hs	cellular component	237	6.40e-77
cytoplasm	Hs	cellular component	401	4.20e-141
cytosol	Hs	cellular component	401	4.20e-141
cytoskeleton	Hs	cellular component	401	4.20e-141
striated muscle thin filament	Hs	cellular component	235	2.64e-76
actin filament	Hs	cellular component	237	6.40e-77
Arp2/3 protein complex	Hs	cellular component	401	4.20e-141
focal adhesion	Hs	cellular component	401	4.20e-141
cell cortex	Hs	cellular component	401	4.20e-141
cytoskeletal protein binding	Hs	molecular function	401	4.20e-141
postsynaptic density	Hs	cellular component	401	4.20e-141
actin cytoskeleton	Hs	cellular component	401	4.20e-141
membrane	Hs	cellular component	401	4.20e-141
ATPase activity	Hs	molecular function	237	6.40e-77
myosin binding	Hs	molecular function	237	6.40e-77
sarcomere	Hs	cellular component	237	6.40e-77
lamellipodium	Hs	cellular component	401	4.20e-141
filopodium	Hs	cellular component	237	6.40e-77
actin cap	Hs	cellular component	401	4.20e-141
I band	Hs	cellular component	237	6.40e-77
azurophil granule lumen	Hs	cellular component	401	4.20e-141
actomyosin, actin portion	Hs	cellular component	237	6.40e-77
cell projection	Hs	cellular component	401	4.20e-141
ADP binding	Hs	molecular function	235	2.64e-76
cell body	Hs	cellular component	237	6.40e-77
actin filament binding	Hs	molecular function	401	4.20e-141
podosome core	Hs	cellular component	401	4.20e-141
extracellular exosome	Hs	cellular component	401	4.20e-141
invadopodium	Hs	cellular component	401	4.20e-141
blood microparticle	Hs	cellular component	237	6.40e-77
ficolin-1-rich granule lumen	Hs	cellular component	401	4.20e-141

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
ATP binding	PANTHER	molecular function	1.4E-138
cytoskeleton	PANTHER	cellular component	1.4E-138
Arp2/3 protein complex	PANTHER	cellular component	1.4E-138
actin filament organization	PANTHER	biological process	1.4E-138
Arp2/3 complex-mediated actin nucleation	PANTHER	biological process	1.4E-138

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