Aniseed - Gene card

Gene Card

Best human hits

RPS13

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002087

Gene Model ID

KH2012:KH.C11.268

Location

KhC11:977136..979447

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018058
NCBI Reference Sequence	NM_001032506.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

citb019b24

Plate: R1CiGC31o05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Ribosomal_S13/S15_N	Pfam	Ribosomal protein S13/S15, N-terminal
Ribosomal_S15P	Hamap	Ribosomal protein S15P
Ribosomal_S15	ProSitePatterns	Ribosomal protein S15
Ribosomal_S15	Pfam	Ribosomal protein S15
Ribosomal_S13/S15_N	SMART	Ribosomal protein S13/S15, N-terminal
Ribosomal_S15	CDD	Ribosomal protein S15
S15_NS1_RNA-bd	SUPERFAMILY	S15/NS1, RNA-binding
Ribosomal_S15P	PANTHER	Ribosomal protein S15P
Ribosomal_S15	SMART	Ribosomal protein S15

GOSlim

19 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
RNA splicing	Orthology	biological process
negative regulation of gene expression	Orthology	biological process

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
negative regulation of RNA splicing	Hs	biological process
mRNA 5'-UTR binding	Hs	molecular function
extracellular exosome	Hs	cellular component
small ribosomal subunit rRNA binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	283	4.74e-100
mRNA binding	Hs	molecular function	283	4.74e-100
structural constituent of ribosome	Hs	molecular function	283	4.74e-100
protein binding	Hs	molecular function	283	4.74e-100
intracellular	Hs	cellular component	283	4.74e-100
nucleus	Hs	cellular component	283	4.74e-100
nucleoplasm	Hs	cellular component	283	4.74e-100
nucleolus	Hs	cellular component	283	4.74e-100
cytosol	Hs	cellular component	283	4.74e-100
ribosome	Hs	cellular component	283	4.74e-100
focal adhesion	Hs	cellular component	283	4.74e-100
membrane	Hs	cellular component	283	4.74e-100
cytosolic small ribosomal subunit	Hs	cellular component	283	4.74e-100
intracellular ribonucleoprotein complex	Hs	cellular component	283	4.74e-100
mRNA 5'-UTR binding	Hs	molecular function	283	4.74e-100
extracellular exosome	Hs	cellular component	283	4.74e-100
small ribosomal subunit rRNA binding	Hs	molecular function	283	4.74e-100

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	SMART	molecular function	4.0E-38
intracellular	CDD	cellular component	6.89465E-27
ribosome	SMART	cellular component	4.0E-38
translation	SMART	biological process	4.0E-38