Aniseed - Gene card

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No result

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Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg023c06

Plate: R1CiGC19k05

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
DNA_repair_Rad51/TF_NusA_a-hlx	SUPERFAMILY	DNA repair Rad51/transcription factor NusA, alpha-helical
RecA_monomer-monomer_interface	ProSiteProfiles	DNA recombination and repair protein RecA, monomer-monomer interface
Rad51_DMC1_RadA	CDD	Rad51/DMC1/RadA
RecA_ATP-bd	ProSiteProfiles	DNA recombination and repair protein RecA-like, ATP-binding domain
DNA_recomb/repair_Rad51_C	Pfam	DNA recombination and repair protein Rad51-like, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase

GOSlim

37 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
DNA binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
DNA metabolic process	Orthology	biological process
DNA repair	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
protein C-terminus binding	Orthology	molecular function
cell junction	Blast	cellular component
macromolecular complex	Orthology	cellular component
identical protein binding	Orthology	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
protein homooligomerization	Orthology	biological process
catalytic activity	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
organelle organization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
hydrolase activity	Orthology	molecular function
DNA replication	Orthology	biological process
reproductive process	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
nuclear body	Orthology	cellular component
enzyme binding	Orthology	molecular function
nuclear part	Blast	cellular component
intracellular part	Blast	cellular component

GO (Orthology)

56 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
recombinase activity	Hs	molecular function
nucleotide binding	Hs	molecular function
nuclear chromosome	Hs	cellular component
four-way junction DNA binding	Hs	molecular function
telomere maintenance via recombination	Hs	biological process
double-strand break repair via homologous recombination	Hs	biological process
DNA recombinase assembly	Hs	biological process
DNA synthesis involved in DNA repair	Hs	biological process
strand displacement	Hs	biological process
nuclear chromosome, telomeric region	Hs	cellular component
chromatin	Hs	cellular component
nuclear chromatin	Hs	cellular component
condensed chromosome	Hs	cellular component
condensed nuclear chromosome	Hs	cellular component
lateral element	Hs	cellular component
DNA binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
endodeoxyribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
DNA metabolic process	Hs	biological process
DNA unwinding involved in DNA replication	Hs	biological process
DNA repair	Hs	biological process
DNA recombination	Hs	biological process
mitotic recombination	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
reciprocal meiotic recombination	Hs	biological process
protein C-terminus binding	Hs	molecular function
DNA-dependent ATPase activity	Hs	molecular function
regulation of double-strand break repair via homologous recombination	Hs	biological process
telomere maintenance via telomere lengthening	Hs	biological process
PML body	Hs	cellular component
replication fork processing	Hs	biological process
macromolecular complex	Hs	cellular component
site of double-strand break	Hs	cellular component
interstrand cross-link repair	Hs	biological process
strand invasion	Hs	biological process
identical protein binding	Hs	molecular function
single-stranded DNA-dependent ATPase activity	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
protein homooligomerization	Hs	biological process
meiotic cell cycle	Hs	biological process
DNA polymerase binding	Hs	molecular function
chromosome organization involved in meiotic cell cycle	Hs	biological process
cellular response to ionizing radiation	Hs	biological process
mitotic recombination-dependent replication fork processing	Hs	biological process

GO (Blast)

43 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
recombinase activity	Hs	molecular function	326	1.65e-112
nucleotide binding	Hs	molecular function	326	1.65e-112
nuclear chromosome	Hs	cellular component	326	1.65e-112
four-way junction DNA binding	Hs	molecular function	326	1.65e-112
chromosome, telomeric region	Hs	cellular component	198	1.80e-62
nuclear chromosome, telomeric region	Hs	cellular component	326	1.65e-112
chromatin	Hs	cellular component	326	1.65e-112
nuclear chromatin	Hs	cellular component	326	1.65e-112
condensed chromosome	Hs	cellular component	326	1.65e-112
condensed nuclear chromosome	Hs	cellular component	326	1.65e-112
lateral element	Hs	cellular component	326	1.65e-112
DNA binding	Hs	molecular function	326	1.65e-112
double-stranded DNA binding	Hs	molecular function	326	1.65e-112
single-stranded DNA binding	Hs	molecular function	326	1.65e-112
endodeoxyribonuclease activity	Hs	molecular function	326	1.65e-112
protein binding	Hs	molecular function	326	1.65e-112
ATP binding	Hs	molecular function	326	1.65e-112
nucleus	Hs	cellular component	326	1.65e-112
nucleoplasm	Hs	cellular component	326	1.65e-112
replication fork	Hs	cellular component	56.6	2.29e-09
chromosome	Hs	cellular component	198	1.80e-62
nucleolus	Hs	cellular component	326	1.65e-112
cytoplasm	Hs	cellular component	326	1.65e-112
mitochondrion	Hs	cellular component	326	1.65e-112
mitochondrial matrix	Hs	cellular component	326	1.65e-112
microtubule organizing center	Hs	cellular component	326	1.65e-112
cytosol	Hs	cellular component	326	1.65e-112
cytoskeleton	Hs	cellular component	326	1.65e-112
protein C-terminus binding	Hs	molecular function	326	1.65e-112
DNA-dependent ATPase activity	Hs	molecular function	326	1.65e-112
crossover junction endodeoxyribonuclease activity	Hs	molecular function	56.6	2.29e-09
PML body	Hs	cellular component	326	1.65e-112
cell junction	Hs	cellular component	56.6	2.29e-09
macromolecular complex	Hs	cellular component	326	1.65e-112
Rad51B-Rad51C-Rad51D-XRCC2 complex	Hs	cellular component	56.6	2.29e-09
Rad51C-XRCC3 complex	Hs	cellular component	56.6	2.29e-09
site of double-strand break	Hs	cellular component	326	1.65e-112
identical protein binding	Hs	molecular function	326	1.65e-112
single-stranded DNA-dependent ATPase activity	Hs	molecular function	326	1.65e-112
intracellular membrane-bounded organelle	Hs	cellular component	56.6	2.29e-09
perinuclear region of cytoplasm	Hs	cellular component	326	1.65e-112
Holliday junction resolvase complex	Hs	cellular component	56.6	2.29e-09
DNA polymerase binding	Hs	molecular function	326	1.65e-112

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
nucleotide binding	SUPERFAMILY	molecular function	2.2E-12
DNA binding	CDD	molecular function	1.11177E-99
ATP binding	ProSiteProfiles	molecular function	17.983
DNA metabolic process	ProSiteProfiles	biological process	19.981
DNA repair	ProSiteProfiles	biological process	17.983
DNA-dependent ATPase activity	ProSiteProfiles	molecular function	17.983

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