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GENE CARD

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Gene Card

Best human hits

DTX1; DTX2; DTX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002256

Gene Model ID

KH2012:KH.C11.423

Location

KhC11:4969975..4973073

Transcript Models and Sequences

  KH2012:KH.C11.423.v1.A.SL2-1
KH2012:KH.C11.423.v1.A.SL3-1
KH2012:KH.C11.423.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000021601
Collections

Gateway full ORF

1 result

cien231219

Plate: VES105_P21

Gene collection 1 (N. Satoh)

1 result

cieg045n22

Plate: R1CiGC22n12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
WWE_dom_sf Gene3D WWE domain superfamily
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
WWE_dom_sf SUPERFAMILY WWE domain superfamily
WWE-dom Pfam WWE domain
WWE-dom ProSiteProfiles WWE domain

GOSlim

41 results

GO Term Annotation Origin Type
transcription coactivator activity Blast molecular function
ubiquitin-protein transferase activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
zinc ion binding Blast molecular function
protein ubiquitination Orthology biological process
nuclear body Blast cellular component
transferase activity Orthology molecular function
ubiquitin protein ligase binding Blast molecular function
nuclear membrane Blast cellular component
metal ion binding Orthology molecular function
protein polyubiquitination Orthology biological process
immune system process Orthology biological process
RNA binding Orthology molecular function
lysosome Orthology cellular component
lysosomal membrane Orthology cellular component
endosome Orthology cellular component
early endosome Orthology cellular component
DNA repair Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
enzyme activator activity Orthology molecular function
protein transport Orthology biological process
membrane Orthology cellular component
enzyme binding Orthology molecular function
macromolecular complex Orthology cellular component
ubiquitin-like protein ligase binding Orthology molecular function
innate immune response Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
defense response Orthology biological process
enzyme regulator activity Orthology molecular function
organelle organization Orthology biological process
proteolysis Orthology biological process
intracellular transport Orthology biological process
whole membrane Orthology cellular component
intracellular organelle part Orthology cellular component
bounding membrane of organelle Orthology cellular component
protein localization to organelle Orthology biological process
receptor binding Blast molecular function

GO (Orthology)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ubiquitin-protein transferase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
protein ubiquitination Hs biological process
transferase activity Hs molecular function
metal ion binding Hs molecular function
protein polyubiquitination Hs biological process
positive regulation of defense response to virus by host Hs biological process
immune system process Hs biological process
RNA binding Hs molecular function
enzyme inhibitor activity Hs molecular function
lysosome Hs cellular component
lysosomal membrane Hs cellular component
endosome Hs cellular component
early endosome Hs cellular component
DNA repair Hs biological process
double-strand break repair Hs biological process
chromatin organization Hs biological process
ubiquitin-dependent protein catabolic process Hs biological process
cellular response to DNA damage stimulus Hs biological process
enzyme activator activity Hs molecular function
endosome to lysosome transport Hs biological process
histone monoubiquitination Hs biological process
protein transport Hs biological process
membrane Hs cellular component
enzyme binding Hs molecular function
early endosome membrane Hs cellular component
positive regulation of protein binding Hs biological process
macromolecular complex Hs cellular component
histone H2A ubiquitination Hs biological process
histone H2B ubiquitination Hs biological process
histone binding Hs molecular function
ubiquitin-like protein ligase binding Hs molecular function
innate immune response Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
defense response to virus Hs biological process
protein autoubiquitination Hs biological process
protein K48-linked ubiquitination Hs biological process
STAT family protein binding Hs molecular function
positive regulation of protein localization to nucleus Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription coactivator activity Hs molecular function 43.1 2.23e-04
ubiquitin-protein transferase activity Hs molecular function 52.4 2.39e-07
Notch binding Hs molecular function 43.1 2.23e-04
protein binding Hs molecular function 49.7 2.08e-06
nucleus Hs cellular component 49.7 2.08e-06
nucleoplasm Hs cellular component 49.7 2.08e-06
cytoplasm Hs cellular component 52.4 2.39e-07
cytosol Hs cellular component 52.4 2.39e-07
zinc ion binding Hs molecular function 52.4 2.39e-07
nuclear body Hs cellular component 43.1 2.23e-04
transferase activity Hs molecular function 52.4 2.39e-07
SH3 domain binding Hs molecular function 43.1 2.23e-04
ubiquitin protein ligase binding Hs molecular function 43.1 2.23e-04
nuclear membrane Hs cellular component 49.7 2.08e-06
metal ion binding Hs molecular function 52.4 2.39e-07

GO (InterProScan)

No result

GO Term Analysis Type e-value

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