Aniseed - Gene card

Gene Card

Best human hits

DAZAP1; MSI2; RBM3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002293

Gene Model ID

KH2012:KH.C11.459

Location

KhC11:4074152..4076939

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_018813867.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cilv005i18

Plate: R1CiGC25g22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain

GOSlim

43 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
RNA processing	Orthology	biological process
spermatogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
macromolecular complex	Orthology	cellular component
cell projection	Orthology	cellular component
mRNA splicing, via spliceosome	Orthology	biological process
chromatin binding	Orthology	molecular function
extracellular space	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
RNA metabolic process	Orthology	biological process
identical protein binding	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein oligomerization	Orthology	biological process
protein homooligomerization	Orthology	biological process
extracellular exosome	Orthology	cellular component
regulation of gene expression	Orthology	biological process
intracellular organelle part	Orthology	cellular component
ribosome	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
transcription regulatory region DNA binding	Orthology	molecular function
nuclear part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
proteolysis	Orthology	biological process
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
response to stress	Orthology	biological process
cytoplasmic part	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
mRNA catabolic process	Orthology	biological process

GO (Orthology)

55 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
RNA processing	Hs	biological process
regulation of translation	Hs	biological process
spermatogenesis	Hs	biological process
large ribosomal subunit	Hs	cellular component
dendrite	Hs	cellular component
cell projection	Hs	cellular component
positive regulation of translation	Hs	biological process
positive regulation of mRNA splicing, via spliceosome	Hs	biological process
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
core promoter binding	Hs	molecular function
osteoblast differentiation	Hs	biological process
chromatin binding	Hs	molecular function
mRNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
extracellular space	Hs	cellular component
spliceosomal complex	Hs	cellular component
nuclear euchromatin	Hs	cellular component
transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
mRNA splice site selection	Hs	biological process
mRNA processing	Hs	biological process
membrane protein ectodomain proteolysis	Hs	biological process
RNA splicing	Hs	biological process
male gonad development	Hs	biological process
response to cold	Hs	biological process
response to UV	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
membrane	Hs	cellular component
RNA metabolic process	Hs	biological process
negative regulation of translation	Hs	biological process
protein domain specific binding	Hs	molecular function
translation repressor activity	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
stress granule assembly	Hs	biological process
identical protein binding	Hs	molecular function
supraspliceosomal complex	Hs	cellular component
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
mRNA stabilization	Hs	biological process
protein oligomerization	Hs	biological process
protein homooligomerization	Hs	biological process
extracellular exosome	Hs	cellular component
small ribosomal subunit rRNA binding	Hs	molecular function
catalytic step 2 spliceosome	Hs	cellular component
cellular response to interleukin-1	Hs	biological process

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	72.0	2.22e-15
RNA binding	Hs	molecular function	72.0	2.22e-15
single-stranded RNA binding	Hs	molecular function	72.0	2.22e-15
protein binding	Hs	molecular function	72.0	2.22e-15
nucleus	Hs	cellular component	71.6	3.56e-15
nucleoplasm	Hs	cellular component	71.6	3.56e-15
nucleolus	Hs	cellular component	69.7	1.55e-15
cytoplasm	Hs	cellular component	72.0	2.22e-15
cytosol	Hs	cellular component	71.6	3.56e-15
polysome	Hs	cellular component	72.0	2.22e-15
poly(U) RNA binding	Hs	molecular function	72.0	2.22e-15
large ribosomal subunit	Hs	cellular component	69.7	1.55e-15
dendrite	Hs	cellular component	69.7	1.55e-15
macromolecular complex	Hs	cellular component	71.6	3.56e-15
poly(G) binding	Hs	molecular function	71.6	3.56e-15
RNA stem-loop binding	Hs	molecular function	71.6	3.56e-15
cell projection	Hs	cellular component	69.7	1.55e-15
ribonucleoprotein complex	Hs	cellular component	71.6	3.56e-15

GO (InterProScan)