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Gene Card

Best human hits

IRX3; IRX4; IRX6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002320

Gene Model ID

KH2012:KH.C11.485

Location

KhC11:1407928..1411982

Transcript Models and Sequences

  KH2012:KH.C11.485.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000021438
NCBI Reference Sequence NM_001078279.1
NCBI Reference Sequence XM_018813872.1
Collections

Gateway full ORF

2 results

cien156471

Plate: VES94_C13

cien167132

Plate: VES96_L04

Gene collection 1 (N. Satoh)

1 result

cicl053f03

Plate: R1CiGC14a14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom ProSiteProfiles Homeobox domain
Iroquois_homeo SMART Iroquois-class homeodomain protein
Homeobox_dom SMART Homeobox domain
Homeobox_KN_domain Pfam Homeobox KN domain
Homeobox_dom CDD Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily

GOSlim

14 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
axon Orthology cellular component
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
anatomical structure development Orthology biological process
cell development Orthology biological process
neuron differentiation Orthology biological process

GO (Orthology)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
mesoderm development Hs biological process
axon Hs cellular component
sequence-specific DNA binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
positive regulation of neuron differentiation Hs biological process
negative regulation of transcription from RNA polymerase II promoter Hs biological process
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function

GO (Blast)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 169 2.05e-46
DNA binding Hs molecular function 169 2.05e-46
nucleus Hs cellular component 169 2.05e-46
cytoplasm Hs cellular component 149 3.51e-39
axon Hs cellular component 149 3.51e-39
sequence-specific DNA binding Hs molecular function 169 2.05e-46

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 1.33E-17
nucleus SMART cellular component 4.9E-4
regulation of transcription, DNA-templated Pfam biological process 1.7E-15
sequence-specific DNA binding ProSitePatterns molecular function

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