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GENE CARD

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Gene Card

Best human hits

CIRBP; RBM3; RBM38

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002373

Gene Model ID

KH2012:KH.C11.533

Location

KhC11:4078267..4079597

Transcript Models and Sequences

  KH2012:KH.C11.533.v1.A.nonSL3-1
KH2012:KH.C11.533.v1.A.SL1-1
KH2012:KH.C11.533.v1.A.SL2-1
KH2012:KH.C11.533.v2.A.nonSL3-1
KH2012:KH.C11.533.v2.A.SL1-1
KH2012:KH.C11.533.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008495
NCBI Reference Sequence NM_001032596.1
Collections

Gateway full ORF

2 results

cima815543

Plate: VES58_A22

cima822402

Plate: VES60_L08

Gene collection 1 (N. Satoh)

2 results

ciad020i18

Plate: R1CiGC03m05

cicl014e22

Plate: R1CiGC09p18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom Pfam RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom_euk SMART RNA recognition motif domain, eukaryote
RRM_dom SMART RNA recognition motif domain

GOSlim

43 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
cell differentiation Orthology biological process
cell projection Orthology cellular component
mRNA splicing, via spliceosome Orthology biological process
chromatin binding Orthology molecular function
extracellular space Orthology cellular component
transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
spermatogenesis Orthology biological process
membrane Orthology cellular component
RNA metabolic process Orthology biological process
identical protein binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein oligomerization Orthology biological process
protein homooligomerization Orthology biological process
extracellular exosome Orthology cellular component
regulation of gene expression Orthology biological process
response to stress Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
intracellular organelle part Orthology cellular component
ribosome Orthology cellular component
negative regulation of gene expression Orthology biological process
positive regulation of gene expression Orthology biological process
mRNA catabolic process Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
nuclear part Orthology cellular component
nuclear lumen Orthology cellular component
proteolysis Orthology biological process
reproductive process Orthology biological process
animal organ development Orthology biological process

GO (Orthology)

55 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
regulation of translation Hs biological process
RNA splicing Hs biological process
response to cold Hs biological process
response to UV Hs biological process
cytoplasmic stress granule Hs cellular component
large ribosomal subunit Hs cellular component
negative regulation of translation Hs biological process
translation repressor activity Hs molecular function
dendrite Hs cellular component
stress granule assembly Hs biological process
cell projection Hs cellular component
positive regulation of translation Hs biological process
mRNA stabilization Hs biological process
small ribosomal subunit rRNA binding Hs molecular function
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
core promoter binding Hs molecular function
osteoblast differentiation Hs biological process
chromatin binding Hs molecular function
single-stranded RNA binding Hs molecular function
extracellular space Hs cellular component
spliceosomal complex Hs cellular component
nuclear euchromatin Hs cellular component
transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
mRNA splice site selection Hs biological process
membrane protein ectodomain proteolysis Hs biological process
spermatogenesis Hs biological process
male gonad development Hs biological process
membrane Hs cellular component
RNA metabolic process Hs biological process
protein domain specific binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
identical protein binding Hs molecular function
supraspliceosomal complex Hs cellular component
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
negative regulation of mRNA splicing, via spliceosome Hs biological process
positive regulation of mRNA splicing, via spliceosome Hs biological process
protein oligomerization Hs biological process
protein homooligomerization Hs biological process
extracellular exosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
cellular response to interleukin-1 Hs biological process

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 73.9 4.92e-16
RNA binding Hs molecular function 73.9 4.92e-16
mRNA binding Hs molecular function 70.5 5.10e-15
mRNA 3'-UTR binding Hs molecular function 73.9 4.92e-16
protein binding Hs molecular function 73.9 4.92e-16
nucleus Hs cellular component 73.9 4.92e-16
nucleoplasm Hs cellular component 73.9 4.92e-16
nucleolus Hs cellular component 73.9 4.92e-16
cytoplasm Hs cellular component 73.9 4.92e-16
cytosol Hs cellular component 70.5 5.10e-15
cytoplasmic stress granule Hs cellular component 73.9 4.92e-16
large ribosomal subunit Hs cellular component 67.8 9.74e-15
translation repressor activity Hs molecular function 73.9 4.92e-16
dendrite Hs cellular component 67.8 9.74e-15
cell projection Hs cellular component 67.8 9.74e-15
small ribosomal subunit rRNA binding Hs molecular function 73.9 4.92e-16

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 9.54E-37

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