Aniseed - Gene card

Gene Card

Best human hits

DPF1; DPF2; DPF3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002375

Gene Model ID

KH2012:KH.C11.535

Location

KhC11:4350686..4355825

Transcript Models and Sequences

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000018662
NCBI Reference Sequence	NM_001078392.1
NCBI Reference Sequence	XM_018813876.1
NCBI Reference Sequence	XM_018813877.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

1 result

cieg016g21

Plate: R1CiGC18c15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_PHD-finger	ProSiteProfiles	Zinc finger, PHD-finger
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_PHD	SMART	Zinc finger, PHD-type
Requiem/DPF_N_dom	Pfam	Requiem/DPF N-terminal domain
Znf_FYVE_PHD	SUPERFAMILY	Zinc finger, FYVE/PHD-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_PHD-finger	Pfam	Zinc finger, PHD-finger
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type

GOSlim

23 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
cytosol	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
apoptotic process	Orthology	biological process
nervous system development	Orthology	biological process
zinc ion binding	Orthology	molecular function
intracellular membrane-bounded organelle	Orthology	cellular component
metal ion binding	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
organelle organization	Orthology	biological process
macromolecular complex	Orthology	cellular component
neuron part	Orthology	cellular component
signal transduction	Orthology	biological process

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear chromatin	Hs	cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
cytosol	Hs	cellular component
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
apoptotic process	Hs	biological process
nervous system development	Hs	biological process
zinc ion binding	Hs	molecular function
intracellular membrane-bounded organelle	Hs	cellular component
metal ion binding	Hs	molecular function
nBAF complex	Hs	cellular component
apoptotic signaling pathway	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	268	1.94e-86
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	268	1.94e-86
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	268	1.94e-86
nucleic acid binding	Hs	molecular function	298	2.76e-98
protein binding	Hs	molecular function	268	1.94e-86
nucleus	Hs	cellular component	298	2.76e-98
nucleoplasm	Hs	cellular component	268	1.94e-86
cytoplasm	Hs	cellular component	298	2.76e-98
centrosome	Hs	cellular component	268	1.94e-86
cytosol	Hs	cellular component	268	1.94e-86
zinc ion binding	Hs	molecular function	298	2.76e-98
intracellular membrane-bounded organelle	Hs	cellular component	268	1.94e-86
metal ion binding	Hs	molecular function	298	2.76e-98
nBAF complex	Hs	cellular component	298	2.76e-98

GO (InterProScan)