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Gene Card

Best human hits

BARD1; DZANK1; PLA2G6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002471

Gene Model ID

KH2012:KH.C11.622

Location

KhC11:4753033..4761829

Transcript Models and Sequences

  KH2012:KH.C11.622.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_009861987.2
Collections

Gateway full ORF

2 results

cien101881

Plate: VES86_J04

cien182327

Plate: VES98_P08

Gene collection 1 (N. Satoh)

2 results

cicl047n04

Plate: R1CiGC13b19

ciad072p08

Plate: R1CiGC07o03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Ankyrin_rpt-contain_sf SUPERFAMILY Ankyrin repeat-containing domain superfamily
Ankyrin_rpt SMART Ankyrin repeat
Fn3_assoc_repeat Pfam Fn3 associated repeat
Ankyrin_rpt ProSiteProfiles Ankyrin repeat
Ankyrin_rpt-contain_dom ProSiteProfiles Ankyrin repeat-containing domain
DZR Pfam Double zinc ribbon
Ankyrin_rpt-contain_sf Gene3D Ankyrin repeat-containing domain superfamily
Ankyrin_rpt-contain_dom CDD Ankyrin repeat-containing domain
Ankyrin_rpt-contain_dom Pfam Ankyrin repeat-containing domain

GOSlim

27 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
ubiquitin-protein transferase activity Blast molecular function
protein binding Orthology molecular function
calmodulin binding Blast molecular function
extracellular space Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
nuclear speck Blast cellular component
transferase activity Blast molecular function
hydrolase activity Blast molecular function
serine hydrolase activity Blast molecular function
kinase binding Blast molecular function
protein kinase binding Blast molecular function
protein homodimerization activity Blast molecular function
metal ion binding Orthology molecular function
protein heterodimerization activity Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

2 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function
metal ion binding Hs molecular function

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ubiquitin ligase complex Hs cellular component 56.6 4.50e-08
RNA binding Hs molecular function 56.6 4.50e-08
phospholipase A2 activity Hs molecular function 58.9 7.31e-09
ubiquitin-protein transferase activity Hs molecular function 56.6 4.50e-08
protein binding Hs molecular function 434 7.62e-142
calmodulin binding Hs molecular function 58.9 7.31e-09
extracellular space Hs cellular component 58.9 7.31e-09
nucleus Hs cellular component 56.6 4.50e-08
nucleoplasm Hs cellular component 56.6 4.50e-08
cytoplasm Hs cellular component 58.9 7.31e-09
mitochondrion Hs cellular component 58.9 7.31e-09
microtubule organizing center Hs cellular component 58.9 7.31e-09
cytosol Hs cellular component 58.9 7.31e-09
membrane Hs cellular component 58.9 7.31e-09
integral component of membrane Hs cellular component 58.9 7.31e-09
nuclear speck Hs cellular component 56.6 4.50e-08
transferase activity Hs molecular function 56.6 4.50e-08
hydrolase activity Hs molecular function 58.9 7.31e-09
serine hydrolase activity Hs molecular function 58.9 7.31e-09
kinase binding Hs molecular function 56.6 4.50e-08
protein kinase binding Hs molecular function 58.9 7.31e-09
BRCA1-BARD1 complex Hs cellular component 56.6 4.50e-08
cytoplasmic ribonucleoprotein granule Hs cellular component 56.6 4.50e-08
protein homodimerization activity Hs molecular function 56.6 4.50e-08
ATP-dependent protein binding Hs molecular function 58.9 7.31e-09
metal ion binding Hs molecular function 434 7.62e-142
protein heterodimerization activity Hs molecular function 56.6 4.50e-08
calcium-independent phospholipase A2 activity Hs molecular function 58.9 7.31e-09
BRCA1-A complex Hs cellular component 56.6 4.50e-08
phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine) Hs molecular function 58.9 7.31e-09
phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine) Hs molecular function 58.9 7.31e-09

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SMART molecular function 0.022

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