Aniseed - Gene card

Gene Card

Best human hits

CIRBP; TRA2A; TRA2B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002577

Gene Model ID

KH2012:KH.C11.720

Location

KhC11:3638145..3641283

Transcript Models and Sequences

KH2012:KH.C11.720.v1.A.nonSL2-1
KH2012:KH.C11.720.v1.A.nonSL3-1
KH2012:KH.C11.720.v1.A.nonSL4-1
KH2012:KH.C11.720.v1.R.ND1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb034c22

Plate: R1CiGC32e01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RRM_dom	Pfam	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily

GOSlim

28 results

GO Term	Annotation Origin	Type
RNA splicing, via transesterification reactions	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Blast	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
identical protein binding	Orthology	molecular function
intracellular membrane-bounded organelle	Orthology	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
protein oligomerization	Orthology	biological process
response to oxidative stress	Orthology	biological process
regulation of gene expression	Orthology	biological process
organelle inner membrane	Orthology	cellular component
nuclear membrane	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cell	Orthology	cellular component
cellular response to organic substance	Orthology	biological process
animal organ development	Orthology	biological process
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
response to reactive oxygen species	Hs	biological process
RNA splicing, via transesterification reactions	Hs	biological process
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nuclear inner membrane	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
nucleolus	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
protein domain specific binding	Hs	molecular function
pre-mRNA binding	Hs	molecular function
identical protein binding	Hs	molecular function
intracellular membrane-bounded organelle	Hs	cellular component
regulation of RNA splicing	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
positive regulation of mRNA splicing, via spliceosome	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
protein oligomerization	Hs	biological process
poly-purine tract binding	Hs	molecular function
cellular response to glucose stimulus	Hs	biological process
embryonic brain development	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	185	3.29e-57
RNA binding	Hs	molecular function	185	3.29e-57
mRNA binding	Hs	molecular function	185	3.29e-57
mRNA 3'-UTR binding	Hs	molecular function	85.1	4.17e-19
protein binding	Hs	molecular function	185	3.29e-57
nucleus	Hs	cellular component	185	3.29e-57
nuclear inner membrane	Hs	cellular component	185	3.29e-57
nucleoplasm	Hs	cellular component	185	3.29e-57
spliceosomal complex	Hs	cellular component	185	3.29e-57
nucleolus	Hs	cellular component	160	7.02e-48
cytoplasm	Hs	cellular component	85.1	4.17e-19
cytoplasmic stress granule	Hs	cellular component	85.1	4.17e-19
protein domain specific binding	Hs	molecular function	185	3.29e-57
translation repressor activity	Hs	molecular function	85.1	4.17e-19
pre-mRNA binding	Hs	molecular function	185	3.29e-57
identical protein binding	Hs	molecular function	185	3.29e-57
intracellular membrane-bounded organelle	Hs	cellular component	160	7.02e-48
perinuclear region of cytoplasm	Hs	cellular component	185	3.29e-57
small ribosomal subunit rRNA binding	Hs	molecular function	85.1	4.17e-19
poly-purine tract binding	Hs	molecular function	185	3.29e-57

GO (InterProScan)