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  4. Gene 'Phmamm.CG.MTP2014.S3...' > 

Gene Card

Best human hits

ATL1; ATL2; ATL3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002625

Gene Model ID

KH2012:KH.C12.101

Location

KhC12:2946901..2955863

Transcript Models and Sequences

  KH2012:KH.C12.101.v1.A.SL1-1
KH2012:KH.C12.101.v1.A.SL2-1
KH2012:KH.C12.101.v1.A.SL4-1
KH2012:KH.C12.101.v2.A.SL3-1

External Database Gene Card

External database links

6 results

Database Gene ID
ENSEMBL ENSCING00000014228
ENSEMBL ENSCING00000014229
ENSEMBL ENSCING00000018310
NCBI Reference Sequence XM_002123604.3
NCBI Reference Sequence XM_018814452.1
NCBI Reference Sequence XM_018814453.1
Collections

Gene collection 1 (N. Satoh)

2 results

citb039n06

Plate: R1CiGC32d12

cicl029e02

Plate: R1CiGC12g05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
G_GB1_RHD3_dom ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Guanylate-bd_N Pfam Guanylate-binding protein, N-terminal

GOSlim

17 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
nucleotide binding Blast molecular function
GTPase activity Blast molecular function
protein binding Blast molecular function
GTP binding Blast molecular function
cytoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum membrane Blast cellular component
Golgi apparatus Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
axon Blast cellular component
identical protein binding Blast molecular function
cell projection Blast cellular component
Golgi apparatus part Blast cellular component
endoplasmic reticulum part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi cis cisterna Hs cellular component 187 1.12e-50
Golgi membrane Hs cellular component 187 1.12e-50
nucleotide binding Hs molecular function 194 1.31e-52
GTPase activity Hs molecular function 194 1.31e-52
protein binding Hs molecular function 194 1.31e-52
GTP binding Hs molecular function 194 1.31e-52
cytoplasm Hs cellular component 187 1.12e-50
endoplasmic reticulum Hs cellular component 194 1.31e-52
endoplasmic reticulum membrane Hs cellular component 194 1.31e-52
Golgi apparatus Hs cellular component 187 1.12e-50
membrane Hs cellular component 194 1.31e-52
integral component of membrane Hs cellular component 194 1.31e-52
hydrolase activity Hs molecular function 194 1.31e-52
axon Hs cellular component 187 1.12e-50
identical protein binding Hs molecular function 194 1.31e-52
cell projection Hs cellular component 187 1.12e-50
endoplasmic reticulum tubular network Hs cellular component 188 4.91e-51
endoplasmic reticulum tubular network membrane Hs cellular component 194 1.31e-52

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 2.9E-49
GTP binding Pfam molecular function 2.9E-49

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