Aniseed - Gene card

Gene Card

Best human hits

PAX2; PAX5; PAX8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002641

Gene Model ID

KH2012:KH.C12.116

Location

KhC12:1531558..1553867

Transcript Models and Sequences

KH2012:KH.C12.116.v1.A.ND4-1
KH2012:KH.C12.116.v2.A.SL1-1
KH2012:KH.C12.116.v2.A.SL2-1
KH2012:KH.C12.116.v2.A.SL3-1
KH2012:KH.C12.116.v2.A.SL5-1
KH2012:KH.C12.116.v2.A.SL6-1
KH2012:KH.C12.116.v2.A.SL7-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000005977
NCBI Reference Sequence	NM_001078491.1
NCBI Reference Sequence	XM_018814209.1
NCBI Reference Sequence	XM_018814210.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cibd011e24

Plate: R1CiGC37h17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-Pax2/5/8b -5245/210 REG00000566 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Paired_dom	SMART	Paired domain
Paired_dom	ProSiteProfiles	Paired domain
WH-like_DNA-bd_sf	Gene3D	Winged helix-like DNA-binding domain superfamily
Paired_dom	CDD	Paired domain
Paired_dom	Pfam	Paired domain
Paired_dom	PRINTS	Paired domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Paired_dom	ProSitePatterns	Paired domain

GOSlim

24 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
core promoter proximal region sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
lysosome	Blast	cellular component
Golgi apparatus	Blast	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
transcription factor binding	Blast	molecular function
macromolecular complex	Blast	cellular component
intracellular membrane-bounded organelle	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
oxidation-reduction process	Blast	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
G-protein coupled receptor activity	Blast	molecular function
catalytic activity	Blast	molecular function
centrosome	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	236	1.41e-68
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function	234	2.57e-67
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	236	1.41e-68
core promoter proximal region sequence-specific DNA binding	Hs	molecular function	233	3.78e-67
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	236	1.41e-68
fibrillar center	Hs	cellular component	236	1.41e-68
DNA binding	Hs	molecular function	236	1.41e-68
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	236	1.41e-68
thyroid-stimulating hormone receptor activity	Hs	molecular function	234	2.57e-67
protein binding	Hs	molecular function	236	1.41e-68
nucleus	Hs	cellular component	236	1.41e-68
nucleoplasm	Hs	cellular component	236	1.41e-68
nucleolus	Hs	cellular component	233	3.78e-67
lysosome	Hs	cellular component	233	3.78e-67
Golgi apparatus	Hs	cellular component	233	3.78e-67
microtubule organizing center	Hs	cellular component	233	3.78e-67
cytosol	Hs	cellular component	236	1.41e-68
transcription factor binding	Hs	molecular function	233	3.78e-67
superoxide-generating NADPH oxidase activity	Hs	molecular function	233	3.78e-67
macromolecular complex	Hs	cellular component	233	3.78e-67
protein-DNA complex	Hs	cellular component	233	3.78e-67
centriolar satellite	Hs	cellular component	233	3.78e-67
intracellular membrane-bounded organelle	Hs	cellular component	236	1.41e-68
sequence-specific DNA binding	Hs	molecular function	234	2.57e-67
transcription regulatory region DNA binding	Hs	molecular function	234	2.57e-67

GO (InterProScan)