Aniseed - Gene card

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000001856
NCBI Reference Sequence	NM_001032511.1
NCBI Reference Sequence	XM_018814203.1

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

21 results

Ci-Prx -7213/1 REG00000592 [ regulatory_region (extended_promoter) ]

Cirobu.REG.KH2012.C12:1337780-1337904|Rx REG00001530 [ inactive_region ]

Ci-Rx -3kb/1 REG00000281 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C12:1331487-1333133|Rx REG00001531 [ inactive_region ]
  - Cirobu.REG.KH2012.C12:1331896-1331990|Rx REG00001532 [ inactive_region ]
- Cirobu.REG.KH2012.C12:1333114-1334401|Rx REG00001533 [ regulatory_region (complex_region) ]

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain
Rx	PANTHER	Retinal homeobox protein Rx
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	SMART	Homeobox domain

GOSlim

29 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Blast	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Blast	molecular function
chromatin binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
ubiquitin-protein transferase activity	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
transcription from RNA polymerase II promoter	InterProScan	biological process
visual perception	InterProScan	biological process
transcription factor binding	Blast	molecular function
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
protein kinase binding	Blast	molecular function
ubiquitin protein ligase binding	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
enzyme binding	Blast	molecular function
animal organ development	InterProScan	biological process

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	112	3.34e-26
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	138	1.07e-35
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function	112	3.34e-26
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	138	1.07e-35
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	138	1.07e-35
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	112	3.34e-26
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	112	3.34e-26
DNA binding	Hs	molecular function	138	1.07e-35
chromatin binding	Hs	molecular function	112	3.34e-26
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	112	3.34e-26
ubiquitin-protein transferase activity	Hs	molecular function	112	3.34e-26
protein binding	Hs	molecular function	112	3.34e-26
intracellular	Hs	cellular component	112	3.34e-26
nucleus	Hs	cellular component	138	1.07e-35
nucleoplasm	Hs	cellular component	112	3.34e-26
cytoplasm	Hs	cellular component	112	3.34e-26
cytosol	Hs	cellular component	112	3.34e-26
transcription factor binding	Hs	molecular function	112	3.34e-26
membrane	Hs	cellular component	112	3.34e-26
integral component of membrane	Hs	cellular component	112	3.34e-26
protein kinase binding	Hs	molecular function	112	3.34e-26
ubiquitin protein ligase binding	Hs	molecular function	112	3.34e-26
histone acetyltransferase binding	Hs	molecular function	112	3.34e-26
sequence-specific DNA binding	Hs	molecular function	138	1.07e-35
transcription regulatory region DNA binding	Hs	molecular function	112	3.34e-26
co-SMAD binding	Hs	molecular function	112	3.34e-26
R-SMAD binding	Hs	molecular function	112	3.34e-26
HMG box domain binding	Hs	molecular function	112	3.34e-26

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	8.55E-27
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	1.2E-78
regulation of transcription, DNA-templated	ProSitePatterns	biological process
transcription from RNA polymerase II promoter	PANTHER	biological process	1.2E-78
visual perception	PANTHER	biological process	1.2E-78
camera-type eye development	PANTHER	biological process	1.2E-78
sequence-specific DNA binding	ProSitePatterns	molecular function

Gene Card

Best human hits

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