Aniseed - Gene card

Gene Card

Best human hits

BCKDHB; PDHB; TKTL2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002681

Gene Model ID

KH2012:KH.C12.153

Location

KhC12:4105756..4111253

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004269
NCBI Reference Sequence	XM_009862212.2
NCBI Reference Sequence	XR_717513.2

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

cits038g18

Plate: R1CiGC34j08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Transketo_C/PFOR_II	SUPERFAMILY	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
Transketo_C/PFOR_II	Gene3D	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
Transketolase_C	Pfam	Transketolase, C-terminal domain
Transketolase-like_Pyr-bd	Pfam	Transketolase-like, pyrimidine-binding domain
Transketolase-like_Pyr-bd	SMART	Transketolase-like, pyrimidine-binding domain
THDP-binding	SUPERFAMILY	Thiamin diphosphate-binding fold

GOSlim

16 results

GO Term	Annotation Origin	Type
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
metabolic process	Orthology	biological process
transferase activity	Blast	molecular function
metal ion binding	Blast	molecular function
oxidation-reduction process	Orthology	biological process
extracellular exosome	Blast	cellular component
macromolecular complex	Orthology	cellular component
phosphate-containing compound metabolic process	Blast	biological process
amide biosynthetic process	Blast	biological process
cytoplasmic part	Blast	cellular component

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
catalytic activity	Hs	molecular function
alpha-ketoacid dehydrogenase activity	Hs	molecular function
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	Hs	molecular function
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
mitochondrial alpha-ketoglutarate dehydrogenase complex	Hs	cellular component
metabolic process	Hs	biological process
branched-chain amino acid catabolic process	Hs	biological process
oxidoreductase activity	Hs	molecular function
carboxy-lyase activity	Hs	molecular function
oxidation-reduction process	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
catalytic activity	Hs	molecular function	543	0.0
alpha-ketoacid dehydrogenase activity	Hs	molecular function	543	0.0
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	Hs	molecular function	543	0.0
pyruvate dehydrogenase activity	Hs	molecular function	195	2.72e-59
pyruvate dehydrogenase (acetyl-transferring) activity	Hs	molecular function	195	2.72e-59
transketolase activity	Hs	molecular function	57.8	4.43e-09
protein binding	Hs	molecular function	543	0.0
nucleus	Hs	cellular component	195	2.72e-59
nucleoplasm	Hs	cellular component	195	2.72e-59
cytoplasm	Hs	cellular component	57.8	4.43e-09
mitochondrion	Hs	cellular component	543	0.0
mitochondrial matrix	Hs	cellular component	543	0.0
mitochondrial alpha-ketoglutarate dehydrogenase complex	Hs	cellular component	543	0.0
oxidoreductase activity	Hs	molecular function	543	0.0
transferase activity	Hs	molecular function	57.8	4.43e-09
carboxy-lyase activity	Hs	molecular function	543	0.0
pyruvate dehydrogenase (NAD+) activity	Hs	molecular function	195	2.72e-59
pyruvate dehydrogenase complex	Hs	cellular component	195	2.72e-59
metal ion binding	Hs	molecular function	57.8	4.43e-09
extracellular exosome	Hs	cellular component	195	2.72e-59

GO (InterProScan)