Aniseed - Gene card

Gene Card

Best human hits

RNASEH1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002753

Gene Model ID

KH2012:KH.C12.219

Location

KhC12:5254918..5257506

Transcript Models and Sequences

KH2012:KH.C12.219.v1.A.ND1-1
KH2012:KH.C12.219.v2.A.SL2-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000014054
NCBI Reference Sequence	XM_002128142.4
NCBI Reference Sequence	XM_009862242.2
NCBI Reference Sequence	XM_018814402.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

1 result

cicl008j22

Plate: R1CiGC09e14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
RNaseH_domain	Pfam	Ribonuclease H domain
RNase_H1_N_sf	Gene3D	Ribonuclease H1, N-terminal domain superfamily
Ribosomal_L9/RNase_H1_N	SUPERFAMILY	Ribosomal protein L9/RNase H1, N-terminal
RNaseH_domain	ProSiteProfiles	Ribonuclease H domain
RNaseH_sf	Gene3D	Ribonuclease H superfamily
RNase_H1_N	Pfam	Ribonuclease H1, N-terminal
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily
RNase_H1_euk	PIRSF	Ribonuclease H1, eukaryote

GOSlim

10 results

GO Term	Annotation Origin	Type
magnesium ion binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
RNA catabolic process	Orthology	biological process
hydrolase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
RNA metabolic process	Orthology	biological process
DNA metabolic process	Orthology	biological process

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
magnesium ion binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
RNA-DNA hybrid ribonuclease activity	Hs	molecular function
ribonuclease activity	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
RNA catabolic process	Hs	biological process
hydrolase activity	Hs	molecular function
DNA replication, removal of RNA primer	Hs	biological process
metal ion binding	Hs	molecular function
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
magnesium ion binding	Hs	molecular function	179	3.57e-55
nucleic acid binding	Hs	molecular function	179	3.57e-55
RNA binding	Hs	molecular function	179	3.57e-55
nuclease activity	Hs	molecular function	179	3.57e-55
endonuclease activity	Hs	molecular function	179	3.57e-55
RNA-DNA hybrid ribonuclease activity	Hs	molecular function	179	3.57e-55
ribonuclease activity	Hs	molecular function	179	3.57e-55
nucleus	Hs	cellular component	179	3.57e-55
cytoplasm	Hs	cellular component	179	3.57e-55
hydrolase activity	Hs	molecular function	179	3.57e-55
metal ion binding	Hs	molecular function	179	3.57e-55

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
magnesium ion binding	PIRSF	molecular function	5.8E-78
nucleic acid binding	Gene3D	molecular function	1.5E-53
RNA-DNA hybrid ribonuclease activity	Pfam	molecular function	2.8E-41