Aniseed - Gene card

Gene Card

Best human hits

CD53; TSPAN11; TSPAN9

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002769

Gene Model ID

KH2012:KH.C12.233

Location

KhC12:1354669..1359441

Transcript Models and Sequences

KH2012:KH.C12.233.v1.B.SL1-1
KH2012:KH.C12.233.v1.B.SL2-1
KH2012:KH.C12.233.v2.A.SL1-1
KH2012:KH.C12.233.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000011248
NCBI Reference Sequence	XM_002121339.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad049k15

Plate: R1CiGC05e08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Tetraspanin_EC2_sf	SUPERFAMILY	Tetraspanin, EC2 domain superfamily
Tetraspanin/Peripherin	Pfam	Tetraspanin/Peripherin
Tetraspanin_EC2_sf	Gene3D	Tetraspanin, EC2 domain superfamily
Tetraspanin_CS	ProSitePatterns	Tetraspanin, conserved site
Tetraspanin	PRINTS	Tetraspanin
Tetraspanin	PIRSF	Tetraspanin

GOSlim

16 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
plasma membrane	Blast	cellular component
integral component of plasma membrane	Orthology	cellular component
focal adhesion	Blast	cellular component
cell surface receptor signaling pathway	Orthology	biological process
cell surface	Blast	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cell junction	Blast	cellular component
extracellular exosome	Blast	cellular component
plasma membrane part	Blast	cellular component
whole membrane	Blast	cellular component
intracellular organelle part	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
bounding membrane of organelle	Blast	cellular component

GO (Orthology)

4 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
integral component of plasma membrane	Hs	cellular component
cell surface receptor signaling pathway	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
immunological synapse	Hs	cellular component	113	3.64e-31
protein binding	Hs	molecular function	113	3.64e-31
plasma membrane	Hs	cellular component	130	3.83e-37
integral component of plasma membrane	Hs	cellular component	130	3.83e-37
cell-cell junction	Hs	cellular component	113	3.64e-31
focal adhesion	Hs	cellular component	130	3.83e-37
cell surface	Hs	cellular component	113	3.64e-31
membrane	Hs	cellular component	130	3.83e-37
integral component of membrane	Hs	cellular component	130	3.83e-37
cell junction	Hs	cellular component	113	3.64e-31
specific granule membrane	Hs	cellular component	113	3.64e-31
extracellular exosome	Hs	cellular component	113	3.64e-31
tertiary granule membrane	Hs	cellular component	113	3.64e-31
tetraspanin-enriched microdomain	Hs	cellular component	130	3.83e-37

GO (InterProScan)