Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

FOXJ1; FOXK1; FOXK2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002920

Gene Model ID

KH2012:KH.C12.370

Location

KhC12:204140..211824

Transcript Models and Sequences

  KH2012:KH.C12.370.v1.A.nonSL10-1
KH2012:KH.C12.370.v1.A.nonSL11-1
KH2012:KH.C12.370.v1.A.nonSL12-1
KH2012:KH.C12.370.v1.A.nonSL13-1
KH2012:KH.C12.370.v1.A.nonSL14-1
KH2012:KH.C12.370.v1.A.nonSL15-1
KH2012:KH.C12.370.v1.A.nonSL2-1
KH2012:KH.C12.370.v1.A.nonSL3-1
KH2012:KH.C12.370.v1.A.nonSL4-1
KH2012:KH.C12.370.v1.A.nonSL5-1
KH2012:KH.C12.370.v1.A.nonSL6-1
KH2012:KH.C12.370.v1.A.nonSL7-1
KH2012:KH.C12.370.v1.A.nonSL8-1
KH2012:KH.C12.370.v1.A.nonSL9-1
KH2012:KH.C12.370.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006184
NCBI Reference Sequence NM_001078247.1
Collections

Gateway full ORF

2 results

cien79754

Plate: VES82_K19

cima830011

Plate: VES61_K20

Gene collection 1 (N. Satoh)

1 result

cieg034p17

Plate: R1CiGC21m15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
FHA_dom Pfam Forkhead-associated (FHA) domain
FHA_dom ProSiteProfiles Forkhead-associated (FHA) domain
FHA_dom SMART Forkhead-associated (FHA) domain
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Fork_head_dom ProSiteProfiles Fork head domain
Fork_head_dom Pfam Fork head domain
Fork_head_dom SMART Fork head domain
TF_fork_head_CS_1 ProSitePatterns Fork head domain conserved site1
SMAD_FHA_dom_sf SUPERFAMILY SMAD/FHA domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Fork_head_dom CDD Fork head domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
FHA_dom CDD Forkhead-associated (FHA) domain
Fork_head_dom PRINTS Fork head domain

GOSlim

14 results

GO Term Annotation Origin Type
magnesium ion binding Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function
metal ion binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
magnesium ion binding Hs molecular function 334 5.05e-106
transcription regulatory region sequence-specific DNA binding Hs molecular function 123 2.53e-30
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 351 8.82e-112
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 334 5.05e-106
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 351 8.82e-112
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 334 5.05e-106
DNA binding Hs molecular function 351 8.82e-112
transcription factor activity, sequence-specific DNA binding Hs molecular function 351 8.82e-112
protein binding Hs molecular function 351 8.82e-112
nucleus Hs cellular component 351 8.82e-112
nucleoplasm Hs cellular component 351 8.82e-112
cytoplasm Hs cellular component 351 8.82e-112
sequence-specific DNA binding Hs molecular function 351 8.82e-112
metal ion binding Hs molecular function 334 5.05e-106

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 2.7E-48
protein binding SUPERFAMILY molecular function 5.18E-15
regulation of transcription, DNA-templated SMART biological process 2.7E-48
sequence-specific DNA binding SMART molecular function 2.7E-48

Back to Top