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GENE CARD

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Gene Card

Best human hits

CALM1; CALM3; EFHD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002948

Gene Model ID

KH2012:KH.C12.396

Location

KhC12:1084921..1085806

Transcript Models and Sequences

  KH2012:KH.C12.396.v1.A.ND1-1
KH2012:KH.C12.396.v1.A.nonSL11-1
KH2012:KH.C12.396.v1.A.nonSL3-1
KH2012:KH.C12.396.v1.A.nonSL4-1
KH2012:KH.C12.396.v1.A.nonSL5-1
KH2012:KH.C12.396.v1.A.nonSL6-1
KH2012:KH.C12.396.v1.A.nonSL7-1
KH2012:KH.C12.396.v1.A.nonSL8-1
KH2012:KH.C12.396.v1.A.nonSL9-1
KH2012:KH.C12.396.v1.A.SL10-1
KH2012:KH.C12.396.v1.A.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_009862129.1
Collections

Gateway full ORF

2 results

cima868247

Plate: VES66_P05

cima884114

Plate: VES69_M11

Gene collection 1 (N. Satoh)

1 result

cits035k15

Plate: R1CiGC34d05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
EF_hand_dom CDD EF-hand domain
EF_hand_dom ProSiteProfiles EF-hand domain
EF_hand_dom SMART EF-hand domain
EF_Hand_1_Ca_BS ProSitePatterns EF-Hand 1, calcium-binding site
EF-hand-dom_pair SUPERFAMILY EF-hand domain pair
EF_hand_dom Pfam EF-hand domain

GOSlim

38 results

GO Term Annotation Origin Type
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
mitochondrial inner membrane Blast cellular component
centrosome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
membrane Blast cellular component
kinase activity Blast molecular function
protein kinase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
cytoskeletal part Blast cellular component
microtubule cytoskeleton Blast cellular component
enzyme binding Blast molecular function
molecular function regulator Blast molecular function
microtubule Blast cellular component
phosphotransferase activity, alcohol group as acceptor Blast molecular function
ion transport Blast biological process
transmembrane transport Blast biological process
metal ion transport Blast biological process
cytoplasmic part Blast cellular component
organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cytoskeletal protein binding Blast molecular function
protein N-terminus binding Blast molecular function
integral component of membrane Blast cellular component
enzyme activator activity Blast molecular function
protein serine/threonine kinase activity Blast molecular function
protein dephosphorylation Blast biological process
regulation of cellular metabolic process Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

37 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
spindle pole Hs cellular component 45.1 2.89e-06
Ras guanyl-nucleotide exchange factor activity Hs molecular function 45.1 2.89e-06
calcium ion binding Hs molecular function 48.1 5.85e-07
protein binding Hs molecular function 45.1 2.89e-06
extracellular region Hs cellular component 45.1 2.89e-06
nucleus Hs cellular component 45.1 2.89e-06
nucleoplasm Hs cellular component 45.1 2.89e-06
cytoplasm Hs cellular component 45.1 2.89e-06
mitochondrion Hs cellular component 48.1 5.85e-07
mitochondrial inner membrane Hs cellular component 48.1 5.85e-07
centrosome Hs cellular component 45.1 2.89e-06
spindle Hs cellular component 45.1 2.89e-06
cytosol Hs cellular component 45.1 2.89e-06
cytoskeleton Hs cellular component 45.1 2.89e-06
spindle microtubule Hs cellular component 45.1 2.89e-06
plasma membrane Hs cellular component 45.1 2.89e-06
adenylate cyclase binding Hs molecular function 45.1 2.89e-06
inositol-1,4,5-trisphosphate 3-kinase activity Hs molecular function 45.1 2.89e-06
ligand-gated ion channel activity Hs molecular function 45.1 2.89e-06
membrane Hs cellular component 48.1 5.85e-07
kinase activity Hs molecular function 45.1 2.89e-06
calcium channel inhibitor activity Hs molecular function 45.1 2.89e-06
protein kinase binding Hs molecular function 45.1 2.89e-06
protein domain specific binding Hs molecular function 45.1 2.89e-06
sarcomere Hs cellular component 45.1 2.89e-06
titin binding Hs molecular function 45.1 2.89e-06
vesicle Hs cellular component 45.1 2.89e-06
N-terminal myristoylation domain binding Hs molecular function 45.1 2.89e-06
macromolecular complex Hs cellular component 45.1 2.89e-06
calcium channel complex Hs cellular component 45.1 2.89e-06
protein serine/threonine kinase activator activity Hs molecular function 45.1 2.89e-06
ion channel binding Hs molecular function 45.1 2.89e-06
metal ion binding Hs molecular function 48.1 5.85e-07
extracellular exosome Hs cellular component 48.1 5.85e-07
protein phosphatase activator activity Hs molecular function 45.1 2.89e-06
disordered domain specific binding Hs molecular function 45.1 2.89e-06
catalytic complex Hs cellular component 45.1 2.89e-06

GO (InterProScan)

1 result

GO Term Analysis Type e-value
calcium ion binding CDD molecular function 3.13031E-11

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