Aniseed - Gene card

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000024084
NCBI Reference Sequence	NM_001129858.1
NCBI Reference Sequence	XM_009862064.2

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

1 result

cilv028a06

Plate: R1CiGC27m18

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
CSP_DNA-bd	CDD	Cold-shock protein, DNA-binding
CSD	SMART	Cold shock domain
Znf_CCHC	Pfam	Zinc finger, CCHC-type
CSP_DNA-bd	Pfam	Cold-shock protein, DNA-binding
CSP_DNA-bd	PRINTS	Cold-shock protein, DNA-binding
Znf_CCHC	SMART	Zinc finger, CCHC-type
Znf_CCHC	ProSiteProfiles	Zinc finger, CCHC-type
Znf_CCHC_sf	SUPERFAMILY	Zinc finger, CCHC-type superfamily
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold

GOSlim

31 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
zinc ion binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
gamete generation	Orthology	biological process
cell development	Orthology	biological process
RNA metabolic process	Orthology	biological process
RNA catabolic process	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
developmental process	Orthology	biological process
cellular process	Orthology	biological process
RNA processing	Orthology	biological process
intracellular signal transduction	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
neuron differentiation	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
cell	Orthology	cellular component
cellular response to organic substance	Orthology	biological process
macromolecular complex binding	Orthology	molecular function

GO (Orthology)

40 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
P-body	Hs	cellular component
G-quadruplex RNA binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
polysome	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
germ cell development	Hs	biological process
zinc ion binding	Hs	molecular function
cytoplasmic stress granule	Hs	cellular component
miRNA metabolic process	Hs	biological process
miRNA catabolic process	Hs	biological process
negative regulation of translation	Hs	biological process
stem cell population maintenance	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
pre-miRNA processing	Hs	biological process
RNA 3'-end processing	Hs	biological process
translation initiation factor binding	Hs	molecular function
positive regulation of TOR signaling	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
miRNA binding	Hs	molecular function
positive regulation of neuron differentiation	Hs	biological process
positive regulation of translation	Hs	biological process
metal ion binding	Hs	molecular function
stem cell differentiation	Hs	biological process
positive regulation of protein kinase B signaling	Hs	biological process
regulation of gene silencing by miRNA	Hs	biological process
cellular response to glucose stimulus	Hs	biological process
polysome binding	Hs	molecular function
sequence-specific mRNA binding	Hs	molecular function
positive regulation of cytoplasmic translation	Hs	biological process

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
P-body	Hs	cellular component	144	1.16e-43
fibrillar center	Hs	cellular component	67.4	2.23e-13
G-quadruplex RNA binding	Hs	molecular function	144	1.16e-43
nucleic acid binding	Hs	molecular function	147	3.16e-44
DNA binding	Hs	molecular function	147	3.16e-44
RNA binding	Hs	molecular function	147	3.16e-44
mRNA binding	Hs	molecular function	144	1.16e-43
protein binding	Hs	molecular function	147	3.16e-44
nucleus	Hs	cellular component	147	3.16e-44
nucleolus	Hs	cellular component	147	3.16e-44
cytoplasm	Hs	cellular component	147	3.16e-44
endoplasmic reticulum	Hs	cellular component	144	1.16e-43
rough endoplasmic reticulum	Hs	cellular component	144	1.16e-43
cytosol	Hs	cellular component	147	3.16e-44
polysome	Hs	cellular component	144	1.16e-43
zinc ion binding	Hs	molecular function	147	3.16e-44
cytoplasmic stress granule	Hs	cellular component	144	1.16e-43
intracellular ribonucleoprotein complex	Hs	cellular component	144	1.16e-43
translation initiation factor binding	Hs	molecular function	144	1.16e-43
miRNA binding	Hs	molecular function	144	1.16e-43
metal ion binding	Hs	molecular function	147	3.16e-44
polysome binding	Hs	molecular function	144	1.16e-43
sequence-specific mRNA binding	Hs	molecular function	144	1.16e-43

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	2.6E-21
regulation of transcription, DNA-templated	CDD	biological process	4.29769E-26
zinc ion binding	SUPERFAMILY	molecular function	1.55E-11

Gene Card

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