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GENE CARD

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Gene Card

Best human hits

ASCC3; HFM1; SNRNP200

Unique Gene ID

Cirobu.g00002976

Gene Model ID

KH2012:KH.C12.421

Location

KhC12:430644..454333

Collections

Gateway full ORF

2 results

cien50884

Plate: VES78_J05

cien69517

Plate: VES81_J05

Gene collection 1 (N. Satoh)

1 result

cicl077g24

Plate: R1CiGC39o10

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
AAA+_ATPase SMART AAA+ ATPase domain
Helicase_C Pfam Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C CDD Helicase, C-terminal
Ig_E-set SUPERFAMILY Immunoglobulin E-set
C2_domain_sf Gene3D C2 domain superfamily
Sec63-dom Pfam Sec63 domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Sec63-dom SMART Sec63 domain
Helicase_C SMART Helicase, C-terminal

GOSlim

23 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
cell proliferation Orthology biological process
membrane Orthology cellular component
hydrolase activity Orthology molecular function
identical protein binding Blast molecular function
nucleoside-triphosphatase activity Orthology molecular function
organelle organization Orthology biological process
macromolecular complex Orthology cellular component
nuclear part Blast cellular component

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytosol Hs cellular component
DNA repair Hs biological process
DNA dealkylation involved in DNA repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
cellular response to DNA damage stimulus Hs biological process
cell proliferation Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
DNA duplex unwinding Hs biological process
ATP-dependent 3'-5' DNA helicase activity Hs molecular function
activating signal cointegrator 1 complex Hs cellular component

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 2211 0.0
nucleic acid binding Hs molecular function 2211 0.0
RNA binding Hs molecular function 2211 0.0
ATP-dependent RNA helicase activity Hs molecular function 1451 0.0
helicase activity Hs molecular function 2211 0.0
protein binding Hs molecular function 2211 0.0
ATP binding Hs molecular function 2211 0.0
intracellular Hs cellular component 2211 0.0
nucleus Hs cellular component 2211 0.0
nucleoplasm Hs cellular component 2211 0.0
spliceosomal complex Hs cellular component 1451 0.0
U5 snRNP Hs cellular component 1451 0.0
nucleolus Hs cellular component 326 8.46e-91
cytoplasm Hs cellular component 326 8.46e-91
cytosol Hs cellular component 2211 0.0
ATP-dependent helicase activity Hs molecular function 1451 0.0
membrane Hs cellular component 2211 0.0
hydrolase activity Hs molecular function 2211 0.0
intracellular ribonucleoprotein complex Hs cellular component 1451 0.0
identical protein binding Hs molecular function 1451 0.0
ATP-dependent 3'-5' DNA helicase activity Hs molecular function 2211 0.0
U4/U6 x U5 tri-snRNP complex Hs cellular component 1451 0.0
catalytic step 2 spliceosome Hs cellular component 1451 0.0
activating signal cointegrator 1 complex Hs cellular component 2211 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.0E-26
ATP binding Pfam molecular function 1.0E-26