Aniseed - Gene card

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000018389
ENSEMBL	ENSCING00000019773
ENSEMBL	ENSCING00000021436
NCBI Reference Sequence	XM_018814223.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl077g24

Plate: R1CiGC39o10

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
AAA+_ATPase	SMART	AAA+ ATPase domain
Helicase_C	Pfam	Helicase, C-terminal
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
WH_DNA-bd_sf	SUPERFAMILY	Winged helix DNA-binding domain superfamily
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	CDD	Helicase, C-terminal
Ig_E-set	SUPERFAMILY	Immunoglobulin E-set
C2_domain_sf	Gene3D	C2 domain superfamily
Sec63-dom	Pfam	Sec63 domain
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Sec63-dom	SMART	Sec63 domain
Helicase_C	SMART	Helicase, C-terminal

GOSlim

23 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Orthology	cellular component
DNA repair	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
cell proliferation	Orthology	biological process
membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
identical protein binding	Blast	molecular function
nucleoside-triphosphatase activity	Orthology	molecular function
organelle organization	Orthology	biological process
macromolecular complex	Orthology	cellular component
nuclear part	Blast	cellular component

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
DNA repair	Hs	biological process
DNA dealkylation involved in DNA repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
cell proliferation	Hs	biological process
membrane	Hs	cellular component
hydrolase activity	Hs	molecular function
DNA duplex unwinding	Hs	biological process
ATP-dependent 3'-5' DNA helicase activity	Hs	molecular function
activating signal cointegrator 1 complex	Hs	cellular component

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	2211	0.0
nucleic acid binding	Hs	molecular function	2211	0.0
RNA binding	Hs	molecular function	2211	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	1451	0.0
helicase activity	Hs	molecular function	2211	0.0
protein binding	Hs	molecular function	2211	0.0
ATP binding	Hs	molecular function	2211	0.0
intracellular	Hs	cellular component	2211	0.0
nucleus	Hs	cellular component	2211	0.0
nucleoplasm	Hs	cellular component	2211	0.0
spliceosomal complex	Hs	cellular component	1451	0.0
U5 snRNP	Hs	cellular component	1451	0.0
nucleolus	Hs	cellular component	326	8.46e-91
cytoplasm	Hs	cellular component	326	8.46e-91
cytosol	Hs	cellular component	2211	0.0
ATP-dependent helicase activity	Hs	molecular function	1451	0.0
membrane	Hs	cellular component	2211	0.0
hydrolase activity	Hs	molecular function	2211	0.0
intracellular ribonucleoprotein complex	Hs	cellular component	1451	0.0
identical protein binding	Hs	molecular function	1451	0.0
ATP-dependent 3'-5' DNA helicase activity	Hs	molecular function	2211	0.0
U4/U6 x U5 tri-snRNP complex	Hs	cellular component	1451	0.0
catalytic step 2 spliceosome	Hs	cellular component	1451	0.0
activating signal cointegrator 1 complex	Hs	cellular component	2211	0.0

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	1.0E-26
ATP binding	Pfam	molecular function	1.0E-26

Gene Card

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Transcript Models and Sequences