Gene Card
Best human hits
ASCC3; HFM1; SNRNP200
Unique Gene ID
Cirobu.g00002976
Gene Model ID
KH2012:KH.C12.421
Location
KhC12:430644..454333
Transcript Models and Sequences
cicl077g24
Plate: R1CiGC39o10
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

IPR Term | Analysis | Definition |
---|---|---|
AAA+_ATPase | SMART | AAA+ ATPase domain |
Helicase_C | Pfam | Helicase, C-terminal |
DEAD/DEAH_box_helicase_dom | Pfam | DEAD/DEAH box helicase domain |
P-loop_NTPase | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolase |
WH_DNA-bd_sf | SUPERFAMILY | Winged helix DNA-binding domain superfamily |
Helicase_ATP-bd | SMART | Helicase superfamily 1/2, ATP-binding domain |
Helicase_C | CDD | Helicase, C-terminal |
Ig_E-set | SUPERFAMILY | Immunoglobulin E-set |
C2_domain_sf | Gene3D | C2 domain superfamily |
Sec63-dom | Pfam | Sec63 domain |
Helicase_C | ProSiteProfiles | Helicase, C-terminal |
Helicase_ATP-bd | ProSiteProfiles | Helicase superfamily 1/2, ATP-binding domain |
Sec63-dom | SMART | Sec63 domain |
Helicase_C | SMART | Helicase, C-terminal |
GO Term | Annotation Origin | Type |
---|---|---|
nucleotide binding | Orthology | molecular function |
nucleic acid binding | Orthology | molecular function |
RNA binding | Orthology | molecular function |
protein binding | Orthology | molecular function |
ATP binding | Orthology | molecular function |
intracellular | Orthology | cellular component |
nucleus | Orthology | cellular component |
nucleoplasm | Orthology | cellular component |
nucleolus | Blast | cellular component |
cytoplasm | Blast | cellular component |
cytosol | Orthology | cellular component |
DNA repair | Orthology | biological process |
transcription, DNA-templated | Orthology | biological process |
regulation of transcription, DNA-templated | Orthology | biological process |
cellular response to DNA damage stimulus | Orthology | biological process |
cell proliferation | Orthology | biological process |
membrane | Orthology | cellular component |
hydrolase activity | Orthology | molecular function |
identical protein binding | Blast | molecular function |
nucleoside-triphosphatase activity | Orthology | molecular function |
organelle organization | Orthology | biological process |
macromolecular complex | Orthology | cellular component |
nuclear part | Blast | cellular component |
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
---|---|---|
nucleotide binding | Hs | molecular function |
nucleic acid binding | Hs | molecular function |
RNA binding | Hs | molecular function |
helicase activity | Hs | molecular function |
protein binding | Hs | molecular function |
ATP binding | Hs | molecular function |
intracellular | Hs | cellular component |
nucleus | Hs | cellular component |
nucleoplasm | Hs | cellular component |
cytosol | Hs | cellular component |
DNA repair | Hs | biological process |
DNA dealkylation involved in DNA repair | Hs | biological process |
transcription, DNA-templated | Hs | biological process |
regulation of transcription, DNA-templated | Hs | biological process |
cellular response to DNA damage stimulus | Hs | biological process |
cell proliferation | Hs | biological process |
membrane | Hs | cellular component |
hydrolase activity | Hs | molecular function |
DNA duplex unwinding | Hs | biological process |
ATP-dependent 3'-5' DNA helicase activity | Hs | molecular function |
activating signal cointegrator 1 complex | Hs | cellular component |
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
---|---|---|---|---|
nucleotide binding | Hs | molecular function | 2211 | 0.0 |
nucleic acid binding | Hs | molecular function | 2211 | 0.0 |
RNA binding | Hs | molecular function | 2211 | 0.0 |
ATP-dependent RNA helicase activity | Hs | molecular function | 1451 | 0.0 |
helicase activity | Hs | molecular function | 2211 | 0.0 |
protein binding | Hs | molecular function | 2211 | 0.0 |
ATP binding | Hs | molecular function | 2211 | 0.0 |
intracellular | Hs | cellular component | 2211 | 0.0 |
nucleus | Hs | cellular component | 2211 | 0.0 |
nucleoplasm | Hs | cellular component | 2211 | 0.0 |
spliceosomal complex | Hs | cellular component | 1451 | 0.0 |
U5 snRNP | Hs | cellular component | 1451 | 0.0 |
nucleolus | Hs | cellular component | 326 | 8.46e-91 |
cytoplasm | Hs | cellular component | 326 | 8.46e-91 |
cytosol | Hs | cellular component | 2211 | 0.0 |
ATP-dependent helicase activity | Hs | molecular function | 1451 | 0.0 |
membrane | Hs | cellular component | 2211 | 0.0 |
hydrolase activity | Hs | molecular function | 2211 | 0.0 |
intracellular ribonucleoprotein complex | Hs | cellular component | 1451 | 0.0 |
identical protein binding | Hs | molecular function | 1451 | 0.0 |
ATP-dependent 3'-5' DNA helicase activity | Hs | molecular function | 2211 | 0.0 |
U4/U6 x U5 tri-snRNP complex | Hs | cellular component | 1451 | 0.0 |
catalytic step 2 spliceosome | Hs | cellular component | 1451 | 0.0 |
activating signal cointegrator 1 complex | Hs | cellular component | 2211 | 0.0 |
GO Term | Analysis | Type | e-value |
---|---|---|---|
nucleic acid binding | Pfam | molecular function | 1.0E-26 |
ATP binding | Pfam | molecular function | 1.0E-26 |