Aniseed - Gene card

Gene Card

Best human hits

IGF2BP1; IGF2BP2; IGF2BP3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002996

Gene Model ID

KH2012:KH.C12.441

Location

KhC12:4140611..4142957

Transcript Models and Sequences

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg085h06

Plate: R1CiGC40d21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
IGF2BP2	PANTHER	Insulin-like growth factor 2 mRNA-binding protein 2
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain
KH_dom_type_1	Pfam	K Homology domain, type 1
KH_dom	SMART	K Homology domain
RRM_dom	SMART	RNA recognition motif domain

GOSlim

25 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
anatomical structure morphogenesis	Orthology	biological process
lamellipodium	Orthology	cellular component
axon	Orthology	cellular component
cell projection	Orthology	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
regulation of gene expression	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
plasma membrane region	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
cell projection part	Orthology	cellular component
postsynapse	Orthology	cellular component
mRNA catabolic process	Orthology	biological process
organic substance transport	Orthology	biological process
developmental process	Orthology	biological process

GO (Orthology)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
RNA localization	Hs	biological process
translation	Hs	biological process
regulation of translation	Hs	biological process
anatomical structure morphogenesis	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
negative regulation of translation	Hs	biological process
lamellipodium	Hs	cellular component
filopodium	Hs	cellular component
axon	Hs	cellular component
dendrite	Hs	cellular component
growth cone	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
cell projection	Hs	cellular component
dendritic spine	Hs	cellular component
regulation of mRNA stability	Hs	biological process
translation regulator activity	Hs	molecular function
mRNA 5'-UTR binding	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
mRNA transport	Hs	biological process
CRD-mediated mRNA stability complex	Hs	cellular component
neuronal stem cell population maintenance	Hs	biological process

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	250	5.65e-77
RNA binding	Hs	molecular function	250	5.65e-77
mRNA binding	Hs	molecular function	250	5.65e-77
mRNA 3'-UTR binding	Hs	molecular function	250	5.65e-77
protein binding	Hs	molecular function	250	5.65e-77
nucleus	Hs	cellular component	250	5.65e-77
nucleoplasm	Hs	cellular component	250	5.65e-77
cytoplasm	Hs	cellular component	250	5.65e-77
cytosol	Hs	cellular component	250	5.65e-77
cytoskeleton	Hs	cellular component	241	4.17e-73
cytoplasmic stress granule	Hs	cellular component	250	5.65e-77
lamellipodium	Hs	cellular component	250	5.65e-77
filopodium	Hs	cellular component	250	5.65e-77
axon	Hs	cellular component	250	5.65e-77
dendrite	Hs	cellular component	250	5.65e-77
growth cone	Hs	cellular component	250	5.65e-77
intracellular ribonucleoprotein complex	Hs	cellular component	250	5.65e-77
cell projection	Hs	cellular component	250	5.65e-77
dendritic spine	Hs	cellular component	250	5.65e-77
translation regulator activity	Hs	molecular function	250	5.65e-77
mRNA 5'-UTR binding	Hs	molecular function	250	5.65e-77
perinuclear region of cytoplasm	Hs	cellular component	250	5.65e-77
CRD-mediated mRNA stability complex	Hs	cellular component	250	5.65e-77

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	9.51E-21
RNA binding	SUPERFAMILY	molecular function	3.65E-14

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima820342

cima861908

Gene collection 1 (N. Satoh)

ciad013d09

cieg085h06

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)