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GENE CARD

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Gene Card

Best human hits

SRBD1; SUPT6H

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003093

Gene Model ID

KH2012:KH.C12.53

Location

KhC12:2651582..2673149

Transcript Models and Sequences

  KH2012:KH.C12.53.v1.B.SL1-1
KH2012:KH.C12.53.v2.B.SL1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000007682
ENSEMBL ENSCING00000007691
ENSEMBL ENSCING00000014244
ENSEMBL ENSCING00000014246
Collections

Gateway full ORF

2 results

cien125439

Plate: VES89_P21

cien146146

Plate: VES93_E02

Gene collection 1 (N. Satoh)

4 results

cilv002h24

Plate: R1CiGC25c19

cieg008a12

Plate: R1CiGC16n21

cieg019f10

Plate: R1CiGC18o06

cicl046k23

Plate: R1CiGC13g08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

20 results

IPR Term Analysis Definition
S1_dom SMART RNA-binding domain, S1
RNaseH-like_sf SUPERFAMILY Ribonuclease H-like superfamily
S1_domain Pfam S1 domain
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
Spt6_SH2_N CDD Spt6, SH2 domain, N terminus
TF_Spt6 PIRSF Transcription elongation factor Spt6
Spt6_SH2 Pfam Spt6, SH2 domain
TF_Spt6 PANTHER Transcription elongation factor Spt6
SH2_dom_sf Gene3D SH2 domain superfamily
Spt6_dom Pfam Death-like domain of Spt6
YqgF/RNaseH-like_dom SMART YqgF/RNase H-like domain
Spt6_acidic_N_dom Pfam Spt6 acidic, N-terminal domain
Spt6_SH2_C CDD Spt6, SH2 domain, C terminus
Spt6_HHH Pfam Transcription elongation factor Spt6, helix-hairpin-helix motif
S1_domain ProSiteProfiles S1 domain
Spt6_YqgF Pfam Transcription elongation factor Spt6, YqgF domain
SH2_dom_sf SUPERFAMILY SH2 domain superfamily
SH2 SMART SH2 domain
Spt6_HTH_DNA-bd_dom Pfam Helix-turn-helix DNA-binding domain of Spt6
RuvA_2-like SUPERFAMILY RuvA domain 2-like

GOSlim

28 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleobase-containing compound metabolic process Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
organelle organization Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular protein transport Orthology biological process
regulation of gene expression Orthology biological process
chromatin binding Orthology molecular function
macromolecular complex binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
mRNA metabolic process Orthology biological process
organic substance transport Orthology biological process
cellular protein modification process Orthology biological process

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription factor activity, core RNA polymerase II binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleobase-containing compound metabolic process Hs biological process
chromatin remodeling Hs biological process
chromatin silencing Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
transcription elongation factor complex Hs cellular component
RNA splicing Hs biological process
regulation of mRNA export from nucleus Hs biological process
viral process Hs biological process
nucleosome binding Hs molecular function
regulation of DNA-templated transcription, elongation Hs biological process
positive regulation of transcription elongation from RNA polymerase II promoter Hs biological process
nucleosome organization Hs biological process
transcriptionally active chromatin Hs cellular component
histone binding Hs molecular function
mRNA transcription from RNA polymerase II promoter Hs biological process
regulation of mRNA processing Hs biological process
mRNA transport Hs biological process
negative regulation of histone H3-K27 methylation Hs biological process
chromatin maintenance Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription factor activity, core RNA polymerase II binding Hs molecular function 1551 0.0
nucleic acid binding Hs molecular function 1551 0.0
DNA binding Hs molecular function 1551 0.0
transcription factor activity, sequence-specific DNA binding Hs molecular function 1551 0.0
RNA binding Hs molecular function 1551 0.0
protein binding Hs molecular function 1551 0.0
nucleus Hs cellular component 1551 0.0
nucleoplasm Hs cellular component 1551 0.0
transcription elongation factor complex Hs cellular component 1551 0.0
nucleosome binding Hs molecular function 1551 0.0
transcriptionally active chromatin Hs cellular component 1551 0.0
histone binding Hs molecular function 1551 0.0

GO (InterProScan)

6 results

GO Term Analysis Type e-value
transcription factor activity, core RNA polymerase II binding PANTHER molecular function 0.0
nucleic acid binding Pfam molecular function 2.6E-7
DNA binding Pfam molecular function 6.6E-23
nucleobase-containing compound metabolic process SMART biological process 9.6E-18
regulation of transcription from RNA polymerase II promoter PANTHER biological process 0.0
regulation of DNA-templated transcription, elongation PANTHER biological process 0.0

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