Aniseed - Gene card

Gene Card

Best human hits

LAMC1; NTN1; NTN3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003280

Gene Model ID

KH2012:KH.C12.72

Location

KhC12:5148792..5157800

Transcript Models and Sequences

KH2012:KH.C12.72.v1.A.SL1-1
KH2012:KH.C12.72.v2.A.SL1-1
KH2012:KH.C12.72.v3.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004654
NCBI Reference Sequence	NM_001032426.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb034o12

Plate: R1CiGC32k05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-netrin -2938/71 REG00000851 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
Netrin_domain	ProSiteProfiles	Netrin domain
Laminin_EGF	SMART	Laminin EGF domain
Laminin_EGF	Pfam	Laminin EGF domain
Laminin_N	ProSiteProfiles	Laminin, N-terminal
Laminin_N	Pfam	Laminin, N-terminal
Netrin_module_non-TIMP	SMART	Netrin module, non-TIMP type
Laminin_N_sf	Gene3D	Laminin, N-terminal domain superfamily
TIMP-like_OB-fold	SUPERFAMILY	Tissue inhibitor of metalloproteinases-like, OB-fold
Laminin_N	SMART	Laminin, N-terminal
Netrin_module_non-TIMP	Pfam	Netrin module, non-TIMP type
Galactose-bd-like_sf	SUPERFAMILY	Galactose-binding-like domain superfamily
Laminin_EGF	ProSiteProfiles	Laminin EGF domain
Laminin_EGF	ProSitePatterns	Laminin EGF domain

GOSlim

11 results

GO Term	Annotation Origin	Type
receptor binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
cytoplasm	Blast	cellular component
endoplasmic reticulum lumen	Blast	cellular component
Golgi apparatus	Blast	cellular component
extracellular exosome	Blast	cellular component
extracellular region part	Blast	cellular component
structural molecule activity	Blast	molecular function
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
receptor binding	Hs	molecular function	321	4.44e-102
extracellular matrix structural constituent	Hs	molecular function	271	1.83e-78
protein binding	Hs	molecular function	458	3.77e-155
extracellular region	Hs	cellular component	458	3.77e-155
proteinaceous extracellular matrix	Hs	cellular component	458	3.77e-155
basement membrane	Hs	cellular component	458	3.77e-155
laminin-1 complex	Hs	cellular component	271	1.83e-78
extracellular space	Hs	cellular component	271	1.83e-78
cytoplasm	Hs	cellular component	458	3.77e-155
endoplasmic reticulum lumen	Hs	cellular component	271	1.83e-78
Golgi apparatus	Hs	cellular component	321	4.44e-102
extracellular matrix	Hs	cellular component	271	1.83e-78
laminin-10 complex	Hs	cellular component	271	1.83e-78
laminin-11 complex	Hs	cellular component	271	1.83e-78
extracellular exosome	Hs	cellular component	271	1.83e-78

GO (InterProScan)