Aniseed - Gene card

Gene Card

Best human hits

COL11A2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003329

Gene Model ID

KH2012:KH.C13.116

Location

KhC13:1601511..1630881

Transcript Models and Sequences

KH2012:KH.C13.116.v1.A.ND1-1
KH2012:KH.C13.116.v1.A.nonSL2-1
KH2012:KH.C13.116.v1.A.nonSL3-1
KH2012:KH.C13.116.v1.A.nonSL4-1
KH2012:KH.C13.116.v1.A.nonSL6-1
KH2012:KH.C13.116.v2.A.SL5-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000001528
NCBI Reference Sequence	XM_009862351.2

Collections

Gene collection 1 (N. Satoh)

4 results

ciad017p24

Plate: R1CiGC02l06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
ConA-like_dom_sf	SUPERFAMILY	Concanavalin A-like lectin/glucanase domain superfamily
Laminin_G	SMART	Laminin G domain
Collagen	Pfam	Collagen triple helix repeat
Laminin_G	Pfam	Laminin G domain

GOSlim

35 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
ribosome	Orthology	cellular component
sensory perception of sound	Orthology	biological process
metal ion binding	Orthology	molecular function
blood vessel development	Orthology	biological process
integrin binding	Orthology	molecular function
extracellular space	Orthology	cellular component
cell adhesion	Orthology	biological process
visual perception	Orthology	biological process
cell migration	Orthology	biological process
extracellular matrix organization	Orthology	biological process
extracellular exosome	Orthology	cellular component
system development	Orthology	biological process
extracellular region part	Orthology	cellular component
structural molecule activity	Orthology	molecular function
macromolecular complex	Orthology	cellular component
catabolic process	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
cell development	Orthology	biological process
heart development	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
protein metabolic process	Orthology	biological process
anion binding	Orthology	molecular function
carbohydrate derivative binding	Orthology	molecular function
biosynthetic process	Orthology	biological process
wound healing	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
multicellular organism development	Orthology	biological process
binding	Orthology	molecular function
cellular component organization	Orthology	biological process

GO (Orthology)

54 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
skeletal system development	Hs	biological process
extracellular matrix structural constituent	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
proteinaceous extracellular matrix	Hs	cellular component
collagen trimer	Hs	cellular component
collagen type XI trimer	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
ribosome	Hs	cellular component
sensory perception of sound	Hs	biological process
extracellular matrix structural constituent conferring tensile strength	Hs	molecular function
collagen fibril organization	Hs	biological process
collagen catabolic process	Hs	biological process
protein binding, bridging	Hs	molecular function
metal ion binding	Hs	molecular function
cartilage development	Hs	biological process
palate development	Hs	biological process
soft palate development	Hs	biological process
cartilage condensation	Hs	biological process
ossification	Hs	biological process
blood vessel development	Hs	biological process
osteoblast differentiation	Hs	biological process
tissue homeostasis	Hs	biological process
chondrocyte differentiation	Hs	biological process
chondrocyte development	Hs	biological process
heart morphogenesis	Hs	biological process
integrin binding	Hs	molecular function
collagen binding	Hs	molecular function
collagen type V trimer	Hs	cellular component
basement membrane	Hs	cellular component
extracellular space	Hs	cellular component
proteoglycan metabolic process	Hs	biological process
cell adhesion	Hs	biological process
cell-matrix adhesion	Hs	biological process
visual perception	Hs	biological process
heparin binding	Hs	molecular function
cell migration	Hs	biological process
extracellular matrix organization	Hs	biological process
extracellular matrix	Hs	cellular component
collagen biosynthetic process	Hs	biological process
wound healing, spreading of epidermal cells	Hs	biological process
endodermal cell differentiation	Hs	biological process
tendon development	Hs	biological process
inner ear morphogenesis	Hs	biological process
proteoglycan binding	Hs	molecular function
skin development	Hs	biological process
platelet-derived growth factor binding	Hs	molecular function
eye morphogenesis	Hs	biological process
skeletal system morphogenesis	Hs	biological process
extracellular matrix binding	Hs	molecular function
detection of mechanical stimulus involved in sensory perception of sound	Hs	biological process
ventricular cardiac muscle tissue morphogenesis	Hs	biological process
extracellular exosome	Hs	cellular component
supramolecular fiber organization	Hs	biological process

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
extracellular matrix structural constituent	Hs	molecular function	644	0.0
protein binding	Hs	molecular function	573	4.65e-178
extracellular region	Hs	cellular component	573	4.65e-178
proteinaceous extracellular matrix	Hs	cellular component	573	4.65e-178
collagen trimer	Hs	cellular component	573	4.65e-178
collagen type XI trimer	Hs	cellular component	573	4.65e-178
endoplasmic reticulum lumen	Hs	cellular component	573	4.65e-178
ribosome	Hs	cellular component	558	1.89e-172
extracellular matrix structural constituent conferring tensile strength	Hs	molecular function	573	4.65e-178
protein binding, bridging	Hs	molecular function	573	4.65e-178
metal ion binding	Hs	molecular function	573	4.65e-178

GO (InterProScan)