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Gene Card

Best human hits

MAP1LC3A; MAP1LC3B; MAP1LC3C

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003345

Gene Model ID

KH2012:KH.C13.130

Location

KhC13:108807..112243

Transcript Models and Sequences

  KH2012:KH.C13.130.v1.C.nonSL10-1
KH2012:KH.C13.130.v1.C.nonSL1-1
KH2012:KH.C13.130.v1.C.nonSL11-1
KH2012:KH.C13.130.v1.C.nonSL12-1
KH2012:KH.C13.130.v1.C.nonSL13-1
KH2012:KH.C13.130.v1.C.nonSL14-1
KH2012:KH.C13.130.v1.C.nonSL15-1
KH2012:KH.C13.130.v1.C.nonSL16-1
KH2012:KH.C13.130.v1.C.nonSL17-1
KH2012:KH.C13.130.v1.C.nonSL18-1
KH2012:KH.C13.130.v1.C.nonSL19-1
KH2012:KH.C13.130.v1.C.nonSL2-1
KH2012:KH.C13.130.v1.C.nonSL4-1
KH2012:KH.C13.130.v1.C.nonSL5-1
KH2012:KH.C13.130.v1.C.nonSL6-1
KH2012:KH.C13.130.v1.C.nonSL7-1
KH2012:KH.C13.130.v1.C.nonSL8-1
KH2012:KH.C13.130.v1.C.nonSL9-1
KH2012:KH.C13.130.v1.C.SL3-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XR_001975021.1
Collections

Gateway full ORF

2 results

cima830166

Plate: VES61_J21

cima833473

Plate: VES62_O12

Gene collection 1 (N. Satoh)

1 result

cicl028j20

Plate: R1CiGC12a03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Ubiquitin-like_domsf SUPERFAMILY Ubiquitin-like domain superfamily
Atg8-like Pfam Autophagy protein Atg8 ubiquitin-like
Atg8-like PANTHER Autophagy protein Atg8 ubiquitin-like
MAP1A/MAP1B_LC3C PANTHER Microtubule-associated protein 1A/1B light chain 3C

GOSlim

28 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
intracellular Blast cellular component
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
microtubule Orthology cellular component
endomembrane system Orthology cellular component
membrane Orthology cellular component
organelle membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
ubiquitin protein ligase binding Orthology molecular function
ubiquitin-like protein transferase activity Orthology molecular function
ligase activity Orthology molecular function
peptidase activity, acting on L-amino acid peptides Orthology molecular function
vacuolar membrane Orthology cellular component
organelle organization Orthology biological process
vacuole Orthology cellular component
cell communication Orthology biological process
cellular response to stress Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
anion binding Blast molecular function
endosome Blast cellular component
cell projection part Blast cellular component
plasma membrane region Blast cellular component
lysosome Blast cellular component

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
autophagosome assembly Hs biological process
autophagosome membrane Hs cellular component
autophagy of mitochondrion Hs biological process
protein binding Hs molecular function
cytoplasm Hs cellular component
autophagosome Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
microtubule Hs cellular component
autophagy Hs biological process
cellular response to nitrogen starvation Hs biological process
cellular response to starvation Hs biological process
endomembrane system Hs cellular component
membrane Hs cellular component
macroautophagy Hs biological process
organelle membrane Hs cellular component
cytoplasmic vesicle Hs cellular component
ubiquitin protein ligase binding Hs molecular function
aggrephagy Hs biological process
cytoplasmic ribonucleoprotein granule Hs cellular component
autophagosome maturation Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
autophagosome membrane Hs cellular component 79.7 3.98e-21
protein binding Hs molecular function 79.7 3.98e-21
phospholipid binding Hs molecular function 65.5 1.13e-15
intracellular Hs cellular component 64.3 2.83e-15
cytoplasm Hs cellular component 79.7 3.98e-21
mitochondrion Hs cellular component 64.3 2.83e-15
late endosome Hs cellular component 65.5 1.13e-15
autophagosome Hs cellular component 79.7 3.98e-21
cytosol Hs cellular component 79.7 3.98e-21
cytoskeleton Hs cellular component 79.7 3.98e-21
microtubule Hs cellular component 79.7 3.98e-21
axoneme Hs cellular component 64.3 2.83e-15
phosphatidylethanolamine binding Hs molecular function 65.5 1.13e-15
endomembrane system Hs cellular component 79.7 3.98e-21
membrane Hs cellular component 79.7 3.98e-21
organelle membrane Hs cellular component 79.7 3.98e-21
cytoplasmic vesicle Hs cellular component 79.7 3.98e-21
ubiquitin protein ligase binding Hs molecular function 79.7 3.98e-21
cytoplasmic ribonucleoprotein granule Hs cellular component 79.7 3.98e-21
autolysosome Hs cellular component 65.5 1.13e-15

GO (InterProScan)

1 result

GO Term Analysis Type e-value
autophagy PANTHER biological process 6.6E-26

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