Aniseed - Gene card

Gene Card

Best human hits

AC011455.3; SARS2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003388

Gene Model ID

KH2012:KH.C13.170

Location

KhC13:1125534..1127790

Transcript Models and Sequences

KH2012:KH.C13.170.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002123144.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg001d02

Plate: R1CiGC15o22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
tRNA-bd_arm	SUPERFAMILY	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm
Ser-tRNA-ligase_type_1	PRINTS	Serine-tRNA ligase, type1
Ser-tRNA-ligase_type_1	TIGRFAM	Serine-tRNA ligase, type1
aa-tRNA-synt_IIb	Pfam	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)
aa-tRNA-synth_II	ProSiteProfiles	Aminoacyl-tRNA synthetase, class II
Ser-tRNA-ligase_type_1	PANTHER	Serine-tRNA ligase, type1

GOSlim

9 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
RNA binding	Orthology	molecular function
ATP binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
ligase activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
RNA biosynthetic process	Orthology	biological process

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
RNA binding	Hs	molecular function
aminoacyl-tRNA ligase activity	Hs	molecular function
serine-tRNA ligase activity	Hs	molecular function
ATP binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
translation	Hs	biological process
tRNA aminoacylation for protein translation	Hs	biological process
seryl-tRNA aminoacylation	Hs	biological process
ligase activity	Hs	molecular function
selenocysteinyl-tRNA(Sec) biosynthetic process	Hs	biological process

GO (Blast)