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GENE CARD

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Gene Card

Best human hits

SRSF12; SRSF3; SRSF7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003523

Gene Model ID

KH2012:KH.C14.115

Location

KhC14:2962761..2965048

Transcript Models and Sequences

  KH2012:KH.C14.115.v1.A.nonSL3-1
KH2012:KH.C14.115.v1.A.nonSL4-1
KH2012:KH.C14.115.v1.A.nonSL5-1
KH2012:KH.C14.115.v1.A.SL1-1
KH2012:KH.C14.115.v1.A.SL2-1
KH2012:KH.C14.115.v2.A.nonSL3-3
KH2012:KH.C14.115.v2.A.nonSL4-3
KH2012:KH.C14.115.v2.A.nonSL5-3
KH2012:KH.C14.115.v2.A.SL1-3
KH2012:KH.C14.115.v2.A.SL2-3
KH2012:KH.C14.115.v3.A.nonSL3-2
KH2012:KH.C14.115.v3.A.nonSL4-2
KH2012:KH.C14.115.v3.A.nonSL5-2
KH2012:KH.C14.115.v3.A.SL1-2
KH2012:KH.C14.115.v3.A.SL2-2

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000003530
NCBI Reference Sequence XM_002131830.3
NCBI Reference Sequence XM_009862534.2
Collections

Gateway full ORF

2 results

cien163847

Plate: VES95_G16

cien230665

Plate: VES105_C18

Gene collection 1 (N. Satoh)

1 result

cilv010l18

Plate: R1CiGC25h12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Znf_CCHC SMART Zinc finger, CCHC-type
RRM_dom ProSiteProfiles RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
Znf_CCHC_sf SUPERFAMILY Zinc finger, CCHC-type superfamily
Znf_CCHC ProSiteProfiles Zinc finger, CCHC-type
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom SMART RNA recognition motif domain
Znf_CCHC Pfam Zinc finger, CCHC-type
RRM_dom Pfam RNA recognition motif domain

GOSlim

12 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
zinc ion binding Blast molecular function
nuclear speck Blast cellular component
metal ion binding Blast molecular function
unfolded protein binding Blast molecular function
extracellular exosome Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 134 1.21e-37
RNA binding Hs molecular function 134 1.21e-37
protein binding Hs molecular function 134 1.21e-37
nucleus Hs cellular component 134 1.21e-37
nucleoplasm Hs cellular component 134 1.21e-37
cytoplasm Hs cellular component 134 1.21e-37
zinc ion binding Hs molecular function 134 1.21e-37
nuclear speck Hs cellular component 109 6.32e-29
protein domain specific binding Hs molecular function 134 1.21e-37
phospholipase binding Hs molecular function 109 6.32e-29
metal ion binding Hs molecular function 134 1.21e-37
RS domain binding Hs molecular function 65.5 4.13e-12
unfolded protein binding Hs molecular function 65.5 4.13e-12
extracellular exosome Hs cellular component 134 1.21e-37
sequence-specific mRNA binding Hs molecular function 109 6.32e-29

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.49E-28
zinc ion binding Pfam molecular function 2.6E-8

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