Gene Card
Best human hits
CSDE1
Unique Gene ID
Cirobu.g00003585
Gene Model ID
KH2012:KH.C14.172
Location
KhC14:2664573..2682552
Transcript Models and Sequences
KH2012:KH.C14.172.v1.A.nonSL10-1
KH2012:KH.C14.172.v1.A.nonSL11-1
KH2012:KH.C14.172.v1.A.nonSL12-1
KH2012:KH.C14.172.v1.A.nonSL13-1
KH2012:KH.C14.172.v1.A.nonSL14-1
KH2012:KH.C14.172.v1.A.nonSL15-1
KH2012:KH.C14.172.v1.A.nonSL16-1
KH2012:KH.C14.172.v1.A.nonSL17-1
KH2012:KH.C14.172.v1.A.nonSL18-1
KH2012:KH.C14.172.v1.A.nonSL19-1
KH2012:KH.C14.172.v1.A.nonSL3-1
KH2012:KH.C14.172.v1.A.nonSL4-1
KH2012:KH.C14.172.v1.A.nonSL5-1
KH2012:KH.C14.172.v1.A.nonSL6-1
KH2012:KH.C14.172.v1.A.nonSL7-1
KH2012:KH.C14.172.v1.A.nonSL8-1
KH2012:KH.C14.172.v1.A.nonSL9-1
KH2012:KH.C14.172.v1.A.SL2-1
KH2012:KH.C14.172.v1.R.ND1-1
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000014465 |
| NCBI Reference Sequence | XM_002127559.4 |
Gateway full ORF
2 results
cien108450
Plate: VES87_P05
cien91576
Plate: VES84_O16
Gene collection 1 (N. Satoh)
3 results
n/a
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InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| NA-bd_OB-fold | SUPERFAMILY | Nucleic acid-binding, OB-fold |
| CSP_DNA-bd | Pfam | Cold-shock protein, DNA-binding |
| Cold-shock_CS | ProSitePatterns | Cold-shock conserved site |
| CSP_DNA-bd | CDD | Cold-shock protein, DNA-binding |
| CSD | SMART | Cold shock domain |
GOSlim
15 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Orthology | molecular function |
| DNA binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| cytoplasm | Orthology | cellular component |
| mitochondrial inner membrane | Orthology | cellular component |
| Golgi apparatus | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| plasma membrane | Orthology | cellular component |
| regulation of transcription, DNA-templated | Orthology | biological process |
| reproductive process | Orthology | biological process |
| animal organ development | Orthology | biological process |
| cytoplasmic part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| nuclear-transcribed mRNA catabolic process | Orthology | biological process |
GO (Orthology)
13 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| nucleic acid binding | Hs | molecular function |
| DNA binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| cytoplasm | Hs | cellular component |
| mitochondrial inner membrane | Hs | cellular component |
| Golgi apparatus | Hs | cellular component |
| cytosol | Hs | cellular component |
| plasma membrane | Hs | cellular component |
| regulation of transcription, DNA-templated | Hs | biological process |
| male gonad development | Hs | biological process |
| CRD-mediated mRNA stability complex | Hs | cellular component |
| nuclear-transcribed mRNA catabolic process, no-go decay | Hs | biological process |
GO (Blast)
10 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 363 | 3.16e-110 |
| DNA binding | Hs | molecular function | 363 | 3.16e-110 |
| RNA binding | Hs | molecular function | 363 | 3.16e-110 |
| protein binding | Hs | molecular function | 363 | 3.16e-110 |
| cytoplasm | Hs | cellular component | 363 | 3.16e-110 |
| mitochondrial inner membrane | Hs | cellular component | 363 | 3.16e-110 |
| Golgi apparatus | Hs | cellular component | 363 | 3.16e-110 |
| cytosol | Hs | cellular component | 363 | 3.16e-110 |
| plasma membrane | Hs | cellular component | 363 | 3.16e-110 |
| CRD-mediated mRNA stability complex | Hs | cellular component | 363 | 3.16e-110 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SMART | molecular function | 4.1E-13 |
| regulation of transcription, DNA-templated | Pfam | biological process | 3.3E-14 |
