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Gene Card

Best human hits

BAP1; UCHL3; UCHL5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003589

Gene Model ID

KH2012:KH.C14.176

Location

KhC14:1455699..1457717

Transcript Models and Sequences

  KH2012:KH.C14.176.v1.A.ND4-1
KH2012:KH.C14.176.v1.A.nonSL5-1
KH2012:KH.C14.176.v1.A.nonSL6-1
KH2012:KH.C14.176.v1.A.SL1-1
KH2012:KH.C14.176.v1.A.SL2-1
KH2012:KH.C14.176.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000000924
NCBI Reference Sequence XM_002119421.2
Collections

Gateway full ORF

2 results

cien65991

Plate: VES80_L13

cien185032

Plate: VES98_O20

Gene collection 1 (N. Satoh)

1 result

cieg008i21

Plate: R1CiGC16f14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Peptidase_C12_UCH Pfam Peptidase C12, ubiquitin carboxyl-terminal hydrolase
Ubiquitinyl_hydrolase_UCH37 PIRSF Ubiquitinyl hydrolase, UCH37 type
Peptidase_C12_UCH PRINTS Peptidase C12, ubiquitin carboxyl-terminal hydrolase
Peptidase_C12_UCH PANTHER Peptidase C12, ubiquitin carboxyl-terminal hydrolase
Peptidase_C12_UCH_sf Gene3D Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily

GOSlim

31 results

GO Term Annotation Origin Type
chromatin binding Blast molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
cytosol Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
proteolysis Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
peptidase activity Orthology molecular function
hydrolase activity Orthology molecular function
extracellular exosome Blast cellular component
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
peptidase activity, acting on L-amino acid peptides Orthology molecular function
endopeptidase activity Orthology molecular function
enzyme regulator activity Orthology molecular function
enzyme binding Orthology molecular function
DNA metabolic process Orthology biological process
brain development Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
anatomical structure morphogenesis Orthology biological process
regulation of cellular metabolic process Orthology biological process
macromolecular complex binding Orthology molecular function
nuclear part Blast cellular component

GO (Orthology)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
proteasome complex Hs cellular component
RNA binding Hs molecular function
thiol-dependent ubiquitin-specific protease activity Hs molecular function
endopeptidase inhibitor activity Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
DNA repair Hs biological process
DNA recombination Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
proteolysis Hs biological process
ubiquitin-dependent protein catabolic process Hs biological process
cellular response to DNA damage stimulus Hs biological process
peptidase activity Hs molecular function
cysteine-type peptidase activity Hs molecular function
negative regulation of endopeptidase activity Hs biological process
protein deubiquitination Hs biological process
hydrolase activity Hs molecular function
lateral ventricle development Hs biological process
midbrain development Hs biological process
Ino80 complex Hs cellular component
cytosolic proteasome complex Hs cellular component
thiol-dependent ubiquitinyl hydrolase activity Hs molecular function
forebrain morphogenesis Hs biological process
regulation of proteasomal protein catabolic process Hs biological process
proteasome binding Hs molecular function

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
proteasome complex Hs cellular component 357 7.79e-123
chromatin binding Hs molecular function 191 2.42e-55
RNA binding Hs molecular function 357 7.79e-123
thiol-dependent ubiquitin-specific protease activity Hs molecular function 357 7.79e-123
endopeptidase inhibitor activity Hs molecular function 357 7.79e-123
protein binding Hs molecular function 357 7.79e-123
intracellular Hs cellular component 357 7.79e-123
nucleus Hs cellular component 357 7.79e-123
nucleoplasm Hs cellular component 357 7.79e-123
cytoplasm Hs cellular component 357 7.79e-123
mitochondrion Hs cellular component 357 7.79e-123
cytosol Hs cellular component 357 7.79e-123
peptidase activity Hs molecular function 357 7.79e-123
cysteine-type peptidase activity Hs molecular function 357 7.79e-123
hydrolase activity Hs molecular function 357 7.79e-123
NEDD8-specific protease activity Hs molecular function 83.2 1.12e-18
Ino80 complex Hs cellular component 357 7.79e-123
cytosolic proteasome complex Hs cellular component 357 7.79e-123
PR-DUB complex Hs cellular component 191 2.42e-55
thiol-dependent ubiquitinyl hydrolase activity Hs molecular function 357 7.79e-123
ubiquitin binding Hs molecular function 83.2 1.12e-18
extracellular exosome Hs cellular component 83.2 1.12e-18
proteasome binding Hs molecular function 357 7.79e-123

GO (InterProScan)

4 results

GO Term Analysis Type e-value
thiol-dependent ubiquitin-specific protease activity PANTHER molecular function 4.6E-126
intracellular PANTHER cellular component 4.6E-126
ubiquitin-dependent protein catabolic process PANTHER biological process 4.6E-126
protein deubiquitination PIRSF biological process 1.3E-112

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