Gene Card
Best human hits
ATRX; RAD54L; RAD54L2
Unique Gene ID
Cirobu.g00003616
Gene Model ID
KH2012:KH.C14.200
Location
KhC14:613033..638837
Transcript Models and Sequences
KH2012:KH.C14.200.v1.B.nonSL2-1
KH2012:KH.C14.200.v1.B.nonSL3-1
KH2012:KH.C14.200.v1.R.ND1-1
External database links
3 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000003076 |
| ENSEMBL | ENSCING00000020503 |
| NCBI Reference Sequence | XM_018814867.1 |
Gateway full ORF
2 results
cima828324
Plate: VES61_N10
cien149873
Plate: VES93_M16
Gene collection 1 (N. Satoh)
4 results
citb1a1
Plate: R1CiGC28b05
cieg014i10
Plate: R1CiGC17j01
cieg041d08
Plate: R1CiGC22g17
cieg045n16
Plate: R1CiGC22n10
n/a
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Click here to see the tree inference method
InterPro
11 results
| IPR Term | Analysis | Definition |
|---|---|---|
| SNF2-like_sf | Gene3D | SNF2-like, N-terminal domain superfamily |
| SNF2_N | Pfam | SNF2-related, N-terminal domain |
| P-loop_NTPase | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolase |
| Helicase_C | Pfam | Helicase, C-terminal |
| Znf_RING/FYVE/PHD | Gene3D | Zinc finger, RING/FYVE/PHD-type |
| Helicase_C | ProSiteProfiles | Helicase, C-terminal |
| Helicase_C | CDD | Helicase, C-terminal |
| Helicase_C | SMART | Helicase, C-terminal |
| ADD | ProSiteProfiles | ADD domain |
| Helicase_ATP-bd | ProSiteProfiles | Helicase superfamily 1/2, ATP-binding domain |
| Helicase_ATP-bd | SMART | Helicase superfamily 1/2, ATP-binding domain |
GOSlim
18 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleotide binding | Blast | molecular function |
| DNA binding | Blast | molecular function |
| chromatin binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| ATP binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| nuclear body | Blast | cellular component |
| hydrolase activity | Blast | molecular function |
| macromolecular complex | Blast | cellular component |
| metal ion binding | Blast | molecular function |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| nuclear lumen | Blast | cellular component |
| intracellular organelle part | Blast | cellular component |
| organelle organization | Blast | biological process |
| nucleoside-triphosphatase activity | Blast | molecular function |
| DNA metabolic process | Blast | biological process |
| nucleic acid binding | Blast | molecular function |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
31 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleotide binding | Hs | molecular function | 467 | 1.08e-137 |
| nuclear chromosome | Hs | cellular component | 407 | 6.04e-115 |
| condensed nuclear chromosome, centromeric region | Hs | cellular component | 407 | 6.04e-115 |
| chromosome, telomeric region | Hs | cellular component | 407 | 6.04e-115 |
| nuclear chromosome, telomeric region | Hs | cellular component | 407 | 6.04e-115 |
| heterochromatin | Hs | cellular component | 407 | 6.04e-115 |
| DNA binding | Hs | molecular function | 467 | 1.08e-137 |
| DNA helicase activity | Hs | molecular function | 407 | 6.04e-115 |
| chromatin binding | Hs | molecular function | 407 | 6.04e-115 |
| helicase activity | Hs | molecular function | 467 | 1.08e-137 |
| protein binding | Hs | molecular function | 467 | 1.08e-137 |
| ATP binding | Hs | molecular function | 467 | 1.08e-137 |
| nucleus | Hs | cellular component | 467 | 1.08e-137 |
| nucleoplasm | Hs | cellular component | 407 | 6.04e-115 |
| chromosome | Hs | cellular component | 407 | 6.04e-115 |
| nuclear heterochromatin | Hs | cellular component | 407 | 6.04e-115 |
| pericentric heterochromatin | Hs | cellular component | 407 | 6.04e-115 |
| DNA translocase activity | Hs | molecular function | 407 | 6.04e-115 |
| nuclear body | Hs | cellular component | 407 | 6.04e-115 |
| PML body | Hs | cellular component | 407 | 6.04e-115 |
| hydrolase activity | Hs | molecular function | 467 | 1.08e-137 |
| nuclear pericentric heterochromatin | Hs | cellular component | 407 | 6.04e-115 |
| telomeric heterochromatin | Hs | cellular component | 407 | 6.04e-115 |
| macromolecular complex | Hs | cellular component | 252 | 3.04e-70 |
| methylated histone binding | Hs | molecular function | 407 | 6.04e-115 |
| annealing helicase activity | Hs | molecular function | 252 | 3.04e-70 |
| histone binding | Hs | molecular function | 407 | 6.04e-115 |
| metal ion binding | Hs | molecular function | 407 | 6.04e-115 |
| chromo shadow domain binding | Hs | molecular function | 407 | 6.04e-115 |
| SWI/SNF superfamily-type complex | Hs | cellular component | 407 | 6.04e-115 |
| nuclear subtelomeric heterochromatin | Hs | cellular component | 407 | 6.04e-115 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| ATP binding | Pfam | molecular function | 1.3E-53 |
