Aniseed - Gene card

Gene Card

Best human hits

RPL9

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003625

Gene Model ID

KH2012:KH.C14.209

Location

KhC14:1675030..1678097

Transcript Models and Sequences

KH2012:KH.C14.209.v1.A.nonSL1-1
KH2012:KH.C14.209.v1.A.nonSL11-1
KH2012:KH.C14.209.v1.A.nonSL12-1
KH2012:KH.C14.209.v1.A.nonSL2-1
KH2012:KH.C14.209.v1.A.nonSL3-1
KH2012:KH.C14.209.v1.A.nonSL4-1
KH2012:KH.C14.209.v1.A.nonSL5-1
KH2012:KH.C14.209.v1.A.nonSL7-1
KH2012:KH.C14.209.v1.A.nonSL8-1
KH2012:KH.C14.209.v2.A.nonSL10-1
KH2012:KH.C14.209.v2.A.nonSL9-1
KH2012:KH.C14.209.v2.A.SL6-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000009310
NCBI Reference Sequence	XM_004226813.3
NCBI Reference Sequence	XM_009862434.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad001f19

Plate: R1CiGC01c19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Ribosomal_L6	PANTHER	Ribosomal protein L6
Ribosomal_L6_a/b-dom	Pfam	Ribosomal protein L6, alpha-beta domain
Ribosomal_L6_a/b-dom_sf	SUPERFAMILY	Ribosomal protein L6, alpha-beta domain superfamily
Ribosomal_L6_CS2	ProSitePatterns	Ribosomal protein L6, conserved site-2
Ribosomal_L6	PIRSF	Ribosomal protein L6
Ribosomal_L6_a/b-dom_sf	Gene3D	Ribosomal protein L6, alpha-beta domain superfamily

GOSlim

14 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
rRNA binding	Hs	molecular function
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	257	1.92e-88
structural constituent of ribosome	Hs	molecular function	257	1.92e-88
protein binding	Hs	molecular function	257	1.92e-88
intracellular	Hs	cellular component	257	1.92e-88
nucleus	Hs	cellular component	257	1.92e-88
cytosol	Hs	cellular component	257	1.92e-88
ribosome	Hs	cellular component	257	1.92e-88
focal adhesion	Hs	cellular component	257	1.92e-88
membrane	Hs	cellular component	257	1.92e-88
rRNA binding	Hs	molecular function	257	1.92e-88
cytosolic large ribosomal subunit	Hs	cellular component	257	1.92e-88
intracellular ribonucleoprotein complex	Hs	cellular component	257	1.92e-88

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	4.0E-90
intracellular	ProSitePatterns	cellular component
ribosome	PANTHER	cellular component	4.0E-90
translation	PANTHER	biological process	4.0E-90
rRNA binding	PANTHER	molecular function	4.0E-90