Aniseed - Gene card

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000002213
NCBI Reference Sequence	XM_002131771.2
NCBI Reference Sequence	XM_009862449.2
NCBI Reference Sequence	XM_009862450.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

citb087d07

Plate: R1CiGC46l05

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
COPB1_appendage_platform_dom	Pfam	Coatomer beta subunit, appendage platform domain
COPB1	PANTHER	Coatomer beta subunit (COPB1)
Coatomer_bsu_C	Pfam	Coatomer beta subunit, C-terminal
ARM-like	Gene3D	Armadillo-like helical
ARM-type_fold	SUPERFAMILY	Armadillo-type fold
COPB1	PIRSF	Coatomer beta subunit (COPB1)
Clathrin/coatomer_adapt-like_N	Pfam	Clathrin/coatomer adaptor, adaptin-like, N-terminal

GOSlim

33 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
structural molecule activity	Orthology	molecular function
binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
lysosomal membrane	Blast	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
intracellular protein transport	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
axon	Blast	cellular component
cytoplasmic vesicle	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
membrane organization	Blast	biological process
postsynapse	Blast	cellular component
cytoplasmic part	Orthology	cellular component
intracellular transport	Orthology	biological process
membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
Golgi apparatus part	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
endosome	Blast	cellular component
plasma membrane part	Blast	cellular component
organelle organization	Blast	biological process
cell projection part	Blast	cellular component
synapse part	Blast	cellular component
neuron part	Blast	cellular component

GO (Orthology)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
structural molecule activity	Hs	molecular function
binding	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component
Golgi apparatus	Hs	cellular component
Golgi-associated vesicle	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
intracellular protein transport	Hs	biological process
ER to Golgi vesicle-mediated transport	Hs	biological process
retrograde vesicle-mediated transport, Golgi to ER	Hs	biological process
intra-Golgi vesicle-mediated transport	Hs	biological process
protein transport	Hs	biological process
membrane	Hs	cellular component
viral process	Hs	biological process
vesicle-mediated transport	Hs	biological process
membrane coat	Hs	cellular component
COPI vesicle coat	Hs	cellular component
transport vesicle	Hs	cellular component
COPI-coated vesicle	Hs	cellular component
COPI-coated vesicle membrane	Hs	cellular component
secretory granule membrane	Hs	cellular component
cytoplasmic vesicle	Hs	cellular component
intracellular membrane-bounded organelle	Hs	cellular component
tertiary granule membrane	Hs	cellular component
ficolin-1-rich granule membrane	Hs	cellular component

GO (Blast)

43 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	1439	0.0
signal sequence binding	Hs	molecular function	70.5	3.76e-12
structural molecule activity	Hs	molecular function	1439	0.0
transporter activity	Hs	molecular function	82.8	5.67e-16
binding	Hs	molecular function	1439	0.0
protein binding	Hs	molecular function	1439	0.0
cytoplasm	Hs	cellular component	1439	0.0
lysosomal membrane	Hs	cellular component	82.8	5.67e-16
endoplasmic reticulum membrane	Hs	cellular component	1439	0.0
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component	1439	0.0
Golgi apparatus	Hs	cellular component	1439	0.0
Golgi-associated vesicle	Hs	cellular component	1439	0.0
trans-Golgi network	Hs	cellular component	70.5	3.76e-12
cytosol	Hs	cellular component	1439	0.0
plasma membrane	Hs	cellular component	1439	0.0
clathrin-coated pit	Hs	cellular component	70.5	3.76e-12
endosome membrane	Hs	cellular component	82.8	5.67e-16
membrane	Hs	cellular component	1439	0.0
membrane coat	Hs	cellular component	1439	0.0
clathrin coat	Hs	cellular component	70.5	3.76e-12
AP-2 adaptor complex	Hs	cellular component	70.5	3.76e-12
AP-3 adaptor complex	Hs	cellular component	82.8	5.67e-16
COPI vesicle coat	Hs	cellular component	1439	0.0
clathrin adaptor complex	Hs	cellular component	70.5	3.76e-12
transport vesicle	Hs	cellular component	1439	0.0
COPI-coated vesicle	Hs	cellular component	1439	0.0
clathrin binding	Hs	molecular function	70.5	3.76e-12
axon	Hs	cellular component	82.8	5.67e-16
COPI-coated vesicle membrane	Hs	cellular component	1439	0.0
endocytic vesicle membrane	Hs	cellular component	70.5	3.76e-12
secretory granule membrane	Hs	cellular component	1439	0.0
clathrin-coated endocytic vesicle membrane	Hs	cellular component	70.5	3.76e-12
cytoplasmic vesicle	Hs	cellular component	1439	0.0
clathrin adaptor activity	Hs	molecular function	70.5	3.76e-12
endolysosome membrane	Hs	cellular component	70.5	3.76e-12
terminal bouton	Hs	cellular component	82.8	5.67e-16
intracellular membrane-bounded organelle	Hs	cellular component	1439	0.0
clathrin-coated endocytic vesicle	Hs	cellular component	70.5	3.76e-12
tertiary granule membrane	Hs	cellular component	1439	0.0
postsynapse	Hs	cellular component	82.8	5.67e-16
presynaptic endosome	Hs	cellular component	82.8	5.67e-16
ficolin-1-rich granule membrane	Hs	cellular component	1439	0.0
axon cytoplasm	Hs	cellular component	82.8	5.67e-16

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
structural molecule activity	Pfam	molecular function	5.5E-60
binding	SUPERFAMILY	molecular function	8.13E-80
cytoplasm	PIRSF	cellular component	0.0
intracellular protein transport	PIRSF	biological process	0.0
vesicle-mediated transport	Pfam	biological process	6.7E-116
membrane coat	Pfam	cellular component	6.7E-116
COPI vesicle coat	Pfam	cellular component	5.5E-60

Gene Card

Best human hits

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Unique Gene ID

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Transcript Models and Sequences