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Gene Card

Best human hits

FAT1; FAT3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004098

Gene Model ID

KH2012:KH.C14.88

Location

KhC14:1271063..1331601

Transcript Models and Sequences

  KH2012:KH.C14.88.v1.B.SL1-1
KH2012:KH.C14.88.v1.B.SL3-1
KH2012:KH.C14.88.v2.R.ND2-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

3 results

cien45124

Plate: VES77_D10

cien93257

Plate: VES84_C21

cien212597

Plate: VES103_D07

Gene collection 1 (N. Satoh)

2 results

cicl003f02

Plate: R1CiGC08d05

cign068c09

Plate: R1CiGC42j12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

15 results

IPR Term Analysis Definition
Cadherin-like SUPERFAMILY Cadherin-like
Cadherin_CS ProSitePatterns Cadherin conserved site
Cadherin SMART Cadherin
Cadherin Pfam Cadherin
Cadherin PRINTS Cadherin
EGF-like_CS ProSitePatterns EGF-like, conserved site
Laminin_G Pfam Laminin G domain
EGF-like_dom ProSiteProfiles EGF-like domain
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
Laminin_G ProSiteProfiles Laminin G domain
EGF-like_dom SMART EGF-like domain
EGF-like_dom Pfam EGF-like domain
EGF_Ca-bd_CS ProSitePatterns EGF-like calcium-binding, conserved site
Laminin_G SMART Laminin G domain

GOSlim

24 results

GO Term Annotation Origin Type
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
plasma membrane Orthology cellular component
integral component of plasma membrane Orthology cellular component
focal adhesion Orthology cellular component
cell adhesion Orthology biological process
cell-cell signaling Orthology biological process
multicellular organism development Orthology biological process
anatomical structure morphogenesis Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
cell migration Orthology biological process
lamellipodium Orthology cellular component
cell junction Orthology cellular component
perinuclear region of cytoplasm Orthology cellular component
extracellular exosome Orthology cellular component
organelle organization Orthology biological process
cellular process Orthology biological process
plasma membrane region Orthology cellular component
cell projection Orthology cellular component
cytoskeletal part Orthology cellular component
adherens junction Orthology cellular component

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
calcium ion binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
plasma membrane Hs cellular component
integral component of plasma membrane Hs cellular component
cell-cell junction Hs cellular component
focal adhesion Hs cellular component
actin filament organization Hs biological process
cell adhesion Hs biological process
homophilic cell adhesion via plasma membrane adhesion molecules Hs biological process
establishment or maintenance of cell polarity Hs biological process
cell-cell signaling Hs biological process
multicellular organism development Hs biological process
anatomical structure morphogenesis Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
cell migration Hs biological process
lamellipodium Hs cellular component
cell junction Hs cellular component
filopodium Hs cellular component
perinuclear region of cytoplasm Hs cellular component
extracellular exosome Hs cellular component
cell-cell adhesion Hs biological process
cell-cell adherens junction Hs cellular component
epithelial cell migration Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
calcium ion binding Hs molecular function 795 0.0
protein binding Hs molecular function 795 0.0
nucleus Hs cellular component 795 0.0
cytoplasm Hs cellular component 795 0.0
plasma membrane Hs cellular component 795 0.0
integral component of plasma membrane Hs cellular component 795 0.0
cell-cell junction Hs cellular component 795 0.0
focal adhesion Hs cellular component 795 0.0
membrane Hs cellular component 795 0.0
integral component of membrane Hs cellular component 795 0.0
lamellipodium Hs cellular component 795 0.0
cell junction Hs cellular component 795 0.0
filopodium Hs cellular component 795 0.0
perinuclear region of cytoplasm Hs cellular component 795 0.0
extracellular exosome Hs cellular component 795 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
calcium ion binding PRINTS molecular function 2.2E-36
plasma membrane ProSitePatterns cellular component
cell adhesion ProSitePatterns biological process
homophilic cell adhesion via plasma membrane adhesion molecules PRINTS biological process 2.2E-36
membrane PRINTS cellular component 2.2E-36

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