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Gene Card

Best human hits

POLR2H

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004114

Gene Model ID

KH2012:KH.C2.1000

Location

KhC2:4779959..4782181

Transcript Models and Sequences

  KH2012:KH.C2.1000.v1.A.ND1-1
KH2012:KH.C2.1000.v1.A.nonSL2-1
KH2012:KH.C2.1000.v1.A.nonSL3-1
KH2012:KH.C2.1000.v1.A.nonSL6-1
KH2012:KH.C2.1000.v1.A.nonSL8-1
KH2012:KH.C2.1000.v1.A.SL4-1
KH2012:KH.C2.1000.v1.A.SL5-1
KH2012:KH.C2.1000.v1.A.SL7-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000011417
NCBI Reference Sequence XM_002122882.3
Collections

Gateway full ORF

2 results

cima895003

Plate: VES71_D16

cima899945

Plate: VES72_L16

Gene collection 1 (N. Satoh)

2 results

cieg028j02

Plate: R1CiGC20m01

cign045a14

Plate: R1CiGC42b01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RNA_pol_Rpb8 PANTHER RNA polymerase, Rpb8
RNA_pol_Rpb8 Pfam RNA polymerase, Rpb8
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
RNA_pol_Rpb8 PIRSF RNA polymerase, Rpb8
RNA_pol_Rpb8 SMART RNA polymerase, Rpb8

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
DNA binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
RNA metabolic process Orthology biological process
nuclear lumen Orthology cellular component
transferase activity, transferring phosphorus-containing groups Orthology molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
RNA biosynthetic process Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
nuclear part Orthology cellular component
DNA repair Orthology biological process
mRNA processing Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
developmental process Orthology biological process
positive regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
RNA polymerase I activity Hs molecular function
RNA polymerase II activity Hs molecular function
RNA polymerase III activity Hs molecular function
DNA binding Hs molecular function
single-stranded DNA binding Hs molecular function
DNA-directed 5'-3' RNA polymerase activity Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA-directed RNA polymerase II, core complex Hs cellular component
DNA-directed RNA polymerase III complex Hs cellular component
nucleolus Hs cellular component
DNA-directed RNA polymerase I complex Hs cellular component
cytosol Hs cellular component
transcription-coupled nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
termination of RNA polymerase I transcription Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
7-methylguanosine mRNA capping Hs biological process
transcription from RNA polymerase III promoter Hs biological process
fibroblast growth factor receptor signaling pathway Hs biological process
RNA metabolic process Hs biological process
positive regulation of type I interferon production Hs biological process
protein-DNA complex Hs cellular component
somatic stem cell population maintenance Hs biological process
snRNA transcription from RNA polymerase II promoter Hs biological process
positive regulation of gene expression, epigenetic Hs biological process
regulation of gene silencing by miRNA Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase I activity Hs molecular function 178 5.72e-58
RNA polymerase II activity Hs molecular function 178 5.72e-58
RNA polymerase III activity Hs molecular function 178 5.72e-58
DNA binding Hs molecular function 178 5.72e-58
single-stranded DNA binding Hs molecular function 178 5.72e-58
DNA-directed 5'-3' RNA polymerase activity Hs molecular function 178 5.72e-58
nucleus Hs cellular component 178 5.72e-58
nucleoplasm Hs cellular component 178 5.72e-58
DNA-directed RNA polymerase II, core complex Hs cellular component 178 5.72e-58
DNA-directed RNA polymerase III complex Hs cellular component 178 5.72e-58
nucleolus Hs cellular component 178 5.72e-58
DNA-directed RNA polymerase I complex Hs cellular component 178 5.72e-58
cytosol Hs cellular component 178 5.72e-58
protein-DNA complex Hs cellular component 178 5.72e-58

GO (InterProScan)

1 result

GO Term Analysis Type e-value
transcription, DNA-templated SMART biological process 3.5E-83

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