Aniseed - Gene card

Gene Card

Best human hits

SEPSECS

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004179

Gene Model ID

KH2012:KH.C2.106

Location

KhC2:6379128..6384576

Transcript Models and Sequences

KH2012:KH.C2.106.v1.A.ND1-1
KH2012:KH.C2.106.v1.A.nonSL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004340
NCBI Reference Sequence	XM_002120534.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg002b01

Plate: R1CiGC15n11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
PyrdxlP-dep_Trfase	SUPERFAMILY	Pyridoxal phosphate-dependent transferase
SepSecS/SepCysS	Pfam	SepSecS/SepCysS family
Sec-tRNA_Se_transferase	PIRSF	O-phosphoseryl-tRNA(Sec) selenium transferase
Sec-tRNA_Se_transferase	TIGRFAM	O-phosphoseryl-tRNA(Sec) selenium transferase
Sec-tRNA_Se_transferase	PANTHER	O-phosphoseryl-tRNA(Sec) selenium transferase
PyrdxlP-dep_Trfase_major	Gene3D	Pyridoxal phosphate-dependent transferase, major domain

GOSlim

9 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
transferase activity	Orthology	molecular function
regulation of gene expression	Orthology	biological process
RNA biosynthetic process	Orthology	biological process

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
tRNA binding	Hs	molecular function
selenocysteine incorporation	Hs	biological process
RNA binding	Hs	molecular function
catalytic activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
translation	Hs	biological process
transferase activity	Hs	molecular function
transferase activity, transferring selenium-containing groups	Hs	molecular function
selenocysteinyl-tRNA(Sec) biosynthetic process	Hs	biological process
phosphoseryl-selenocysteinyl-tRNA selenium transferase activity	Hs	molecular function

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
tRNA binding	Hs	molecular function	598
RNA binding	Hs	molecular function	598
catalytic activity	Hs	molecular function	598
protein binding	Hs	molecular function	598
nucleus	Hs	cellular component	598
cytoplasm	Hs	cellular component	598
cytosol	Hs	cellular component	598
transferase activity	Hs	molecular function	598
transferase activity, transferring selenium-containing groups	Hs	molecular function	598
phosphoseryl-selenocysteinyl-tRNA selenium transferase activity	Hs	molecular function	598

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
catalytic activity	Gene3D	molecular function	6.3E-201
transferase activity	Pfam	molecular function	2.3E-148
transferase activity, transferring selenium-containing groups	PANTHER	molecular function	7.3E-208
selenocysteinyl-tRNA(Sec) biosynthetic process	PANTHER	biological process	7.3E-208