Aniseed - Gene card

Gene Card

Best human hits

RPS3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004201

Gene Model ID

KH2012:KH.C2.108

Location

KhC2:2417029..2419672

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000005003

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cies006d19

Plate: R1CiGC41e01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
KH_dom-like_a/b	Gene3D	K homology domain-like, alpha/beta
Ribosomal_S3_euk/arc	TIGRFAM	Ribosomal protein S3, eukaryotic/archaeal
KH_sf_prok-type	SUPERFAMILY	K homology domain superfamily, prokaryotic type
KH_dom_type_2	ProSiteProfiles	K Homology domain, type 2
Ribosomal_S3_C_sf	SUPERFAMILY	Ribosomal protein S3, C-terminal domain superfamily
Ribosomal_S3_C	Pfam	Ribosomal protein S3, C-terminal
KH_dom_type_2	Pfam	K Homology domain, type 2
Ribosomal_S3_CS	ProSitePatterns	Ribosomal protein S3, conserved site
Ribosomal_S3_C_sf	Gene3D	Ribosomal protein S3, C-terminal domain superfamily

GOSlim

71 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Orthology	cellular component
focal adhesion	Orthology	cellular component
DNA repair	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
apoptotic process	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
response to oxidative stress	Orthology	biological process
cell cycle	Orthology	biological process
microtubule binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function
positive regulation of gene expression	Orthology	biological process
tubulin binding	Orthology	molecular function
membrane	Orthology	cellular component
enzyme binding	Orthology	molecular function
kinase binding	Orthology	molecular function
protein kinase binding	Orthology	molecular function
regulation of apoptotic process	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cell division	Orthology	biological process
extracellular exosome	Orthology	cellular component
catalytic activity	Orthology	molecular function
DNA metabolic process	Orthology	biological process
hydrolase activity	Orthology	molecular function
cytoskeletal part	Orthology	cellular component
microtubule cytoskeleton	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA processing	Orthology	biological process
regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
intracellular organelle part	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
organelle organization	Orthology	biological process
microtubule-based process	Orthology	biological process
protein ubiquitination	Orthology	biological process
cell projection membrane	Orthology	cellular component
cell leading edge	Orthology	cellular component
positive regulation of catalytic activity	Orthology	biological process
intracellular signal transduction	Orthology	biological process
protein serine/threonine kinase activity	Orthology	molecular function
cellular response to stress	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
immune response	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
cofactor binding	Orthology	molecular function
intracellular part	Orthology	cellular component
double-stranded DNA binding	Orthology	molecular function
positive regulation of apoptotic process	Orthology	biological process
endopeptidase activity	Orthology	molecular function
positive regulation of hydrolase activity	Orthology	biological process
cell projection assembly	Orthology	biological process

GO (Orthology)

84 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
cytoplasmic translation	Hs	biological process
DNA binding	Hs	molecular function
damaged DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
endodeoxyribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial matrix	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
spindle	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
polysome	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
focal adhesion	Hs	cellular component
DNA repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
regulation of translation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
response to oxidative stress	Hs	biological process
cell cycle	Hs	biological process
chromosome segregation	Hs	biological process
microtubule binding	Hs	molecular function
transcription factor binding	Hs	molecular function
positive regulation of gene expression	Hs	biological process
tubulin binding	Hs	molecular function
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
lyase activity	Hs	molecular function
negative regulation of translation	Hs	biological process
enzyme binding	Hs	molecular function
kinase binding	Hs	molecular function
protein kinase binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
Hsp70 protein binding	Hs	molecular function
positive regulation of microtubule polymerization	Hs	biological process
positive regulation of protein complex assembly	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
oxidized purine DNA binding	Hs	molecular function
oxidized pyrimidine DNA binding	Hs	molecular function
ruffle membrane	Hs	cellular component
DNA damage response, detection of DNA damage	Hs	biological process
regulation of apoptotic process	Hs	biological process
positive regulation of JUN kinase activity	Hs	biological process
ubiquitin-like protein conjugating enzyme binding	Hs	molecular function
macromolecular complex binding	Hs	molecular function
positive regulation of DNA repair	Hs	biological process
positive regulation of T cell receptor signaling pathway	Hs	biological process
protein kinase A binding	Hs	molecular function
positive regulation of NF-kappaB transcription factor activity	Hs	biological process
spindle assembly	Hs	biological process
cell division	Hs	biological process
iron-sulfur cluster binding	Hs	molecular function
Hsp90 protein binding	Hs	molecular function
extracellular exosome	Hs	cellular component
small ribosomal subunit rRNA binding	Hs	molecular function
cellular response to hydrogen peroxide	Hs	biological process
NF-kappaB complex	Hs	cellular component
cellular response to tumor necrosis factor	Hs	biological process
mitotic spindle	Hs	cellular component
supercoiled DNA binding	Hs	molecular function
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage	Hs	biological process
positive regulation of apoptotic signaling pathway	Hs	biological process
positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis	Hs	biological process

GO (Blast)

51 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	397	1.03e-141
DNA binding	Hs	molecular function	397	1.03e-141
damaged DNA binding	Hs	molecular function	397	1.03e-141
RNA binding	Hs	molecular function	397	1.03e-141
mRNA binding	Hs	molecular function	397	1.03e-141
structural constituent of ribosome	Hs	molecular function	397	1.03e-141
DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	397	1.03e-141
endodeoxyribonuclease activity	Hs	molecular function	397	1.03e-141
protein binding	Hs	molecular function	397	1.03e-141
nucleus	Hs	cellular component	397	1.03e-141
nucleoplasm	Hs	cellular component	397	1.03e-141
nucleolus	Hs	cellular component	397	1.03e-141
cytoplasm	Hs	cellular component	397	1.03e-141
mitochondrion	Hs	cellular component	397	1.03e-141
mitochondrial inner membrane	Hs	cellular component	397	1.03e-141
mitochondrial matrix	Hs	cellular component	397	1.03e-141
endoplasmic reticulum	Hs	cellular component	397	1.03e-141
spindle	Hs	cellular component	397	1.03e-141
cytosol	Hs	cellular component	397	1.03e-141
ribosome	Hs	cellular component	397	1.03e-141
polysome	Hs	cellular component	397	1.03e-141
cytoskeleton	Hs	cellular component	397	1.03e-141
plasma membrane	Hs	cellular component	397	1.03e-141
focal adhesion	Hs	cellular component	397	1.03e-141
microtubule binding	Hs	molecular function	397	1.03e-141
transcription factor binding	Hs	molecular function	397	1.03e-141
tubulin binding	Hs	molecular function	397	1.03e-141
small ribosomal subunit	Hs	cellular component	397	1.03e-141
membrane	Hs	cellular component	397	1.03e-141
lyase activity	Hs	molecular function	397	1.03e-141
enzyme binding	Hs	molecular function	397	1.03e-141
kinase binding	Hs	molecular function	397	1.03e-141
protein kinase binding	Hs	molecular function	397	1.03e-141
cytosolic small ribosomal subunit	Hs	cellular component	397	1.03e-141
intracellular ribonucleoprotein complex	Hs	cellular component	397	1.03e-141
Hsp70 protein binding	Hs	molecular function	397	1.03e-141
oxidized purine DNA binding	Hs	molecular function	397	1.03e-141
oxidized pyrimidine DNA binding	Hs	molecular function	397	1.03e-141
ruffle membrane	Hs	cellular component	397	1.03e-141
ubiquitin-like protein conjugating enzyme binding	Hs	molecular function	397	1.03e-141
macromolecular complex binding	Hs	molecular function	397	1.03e-141
protein kinase A binding	Hs	molecular function	397	1.03e-141
iron-sulfur cluster binding	Hs	molecular function	397	1.03e-141
Hsp90 protein binding	Hs	molecular function	397	1.03e-141
extracellular exosome	Hs	cellular component	397	1.03e-141
small ribosomal subunit rRNA binding	Hs	molecular function	397	1.03e-141
NF-kappaB complex	Hs	cellular component	397	1.03e-141
mitotic spindle	Hs	cellular component	397	1.03e-141
supercoiled DNA binding	Hs	molecular function	397	1.03e-141
class I DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	397	1.03e-141
class III/IV DNA-(apurinic or apyrimidinic site) lyase activity	Hs	molecular function	397	1.03e-141

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
RNA binding	SUPERFAMILY	molecular function	5.89E-25
structural constituent of ribosome	Gene3D	molecular function	2.0E-71
ribosome	Gene3D	cellular component	2.0E-71
translation	Gene3D	biological process	2.0E-71
small ribosomal subunit	TIGRFAM	cellular component	9.6E-71