Aniseed - Gene card

Gene Card

Best human hits

ZC3HC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004210

Gene Model ID

KH2012:KH.C2.1088

Location

KhC2:4512352..4515867

Transcript Models and Sequences

KH2012:KH.C2.1088.v1.A.SL1-2
KH2012:KH.C2.1088.v2.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004440
NCBI Reference Sequence	XM_002128796.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cieg008b23

Plate: R1CiGC16p13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_C3HC-like	Pfam	Zinc finger, C3HC-like
NIPA/Rsm1	Pfam	Nuclear-interacting partner of ALK/Rsm1-like
LAMTOR3	PANTHER	Ragulator complex protein LAMTOR3
LAMTOR3	SMART	Ragulator complex protein LAMTOR3
LAMTOR3	Pfam	Ragulator complex protein LAMTOR3

GOSlim

14 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cell cycle	Orthology	biological process
zinc ion binding	Orthology	molecular function
protein ubiquitination	Orthology	biological process
protein kinase binding	Orthology	molecular function
nuclear membrane	Orthology	cellular component
metal ion binding	Orthology	molecular function
cell division	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
intracellular signal transduction	InterProScan	biological process
regulation of signal transduction	InterProScan	biological process

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cell cycle	Hs	biological process
zinc ion binding	Hs	molecular function
protein ubiquitination	Hs	biological process
protein kinase binding	Hs	molecular function
nuclear membrane	Hs	cellular component
metal ion binding	Hs	molecular function
cell division	Hs	biological process
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	Hs	biological process

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	94.0	9.49e-21
nucleus	Hs	cellular component	94.0	9.49e-21
zinc ion binding	Hs	molecular function	94.0	9.49e-21
protein kinase binding	Hs	molecular function	94.0	9.49e-21
nuclear membrane	Hs	cellular component	94.0	9.49e-21
metal ion binding	Hs	molecular function	94.0	9.49e-21

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleus	Pfam	cellular component	8.3E-19
zinc ion binding	Pfam	molecular function	8.3E-19
regulation of TOR signaling	SMART	biological process	2.8E-48