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GENE CARD

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Gene Card

Best human hits

PCDH11X; PCDH11Y; PCDH9

Unique Gene ID

Cirobu.g00004229

Gene Model ID

KH2012:KH.C2.1104

Location

KhC2:1761839..1773920

Transcript Models and Sequences

  KH2012:KH.C2.1104.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000001556
Collections

Gateway full ORF

2 results

cien106578

Plate: VES86_F22

cien128910

Plate: VES90_I11

Gene collection 1 (N. Satoh)

2 results

cicl055f03

Plate: R1CiGC14f19

cieg030e22

Plate: R1CiGC20b03

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Cadherin-like SUPERFAMILY Cadherin-like
Cadherin_N Pfam Cadherin, N-terminal
Cadherin Pfam Cadherin
Cadherin_CS ProSitePatterns Cadherin conserved site
Cadherin SMART Cadherin
Cadherin PRINTS Cadherin

GOSlim

25 results

GO Term Annotation Origin Type
calcium ion binding Orthology molecular function
plasma membrane Orthology cellular component
integral component of plasma membrane Orthology cellular component
cell adhesion Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
extracellular exosome Orthology cellular component
RNA binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Orthology cellular component
cell-cell signaling Orthology biological process
nervous system development Orthology biological process
cell junction Orthology cellular component
intracellular membrane-bounded organelle Orthology cellular component
dephosphorylation Orthology biological process
cell projection part Orthology cellular component
axon Orthology cellular component
brain development Orthology biological process
membrane organization Orthology biological process
organelle organization Orthology biological process
whole membrane Orthology cellular component
intracellular organelle part Orthology cellular component
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
bounding membrane of organelle Orthology cellular component

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
calcium ion binding Hs molecular function
plasma membrane Hs cellular component
integral component of plasma membrane Hs cellular component
cell adhesion Hs biological process
homophilic cell adhesion via plasma membrane adhesion molecules Hs biological process
negative regulation of phosphatase activity Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
growth cone Hs cellular component
forebrain development Hs biological process
cell-cell contact zone Hs cellular component
extracellular exosome Hs cellular component
platelet degranulation Hs biological process
RNA binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cell-cell junction Hs cellular component
cell-cell signaling Hs biological process
nervous system development Hs biological process
cell junction Hs cellular component
platelet alpha granule membrane Hs cellular component
intracellular membrane-bounded organelle Hs cellular component

GO (Blast)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
calcium ion binding Hs molecular function 411 4.48e-123
plasma membrane Hs cellular component 411 4.48e-123
integral component of plasma membrane Hs cellular component 404 1.06e-119
membrane Hs cellular component 411 4.48e-123
integral component of membrane Hs cellular component 411 4.48e-123
growth cone Hs cellular component 411 4.48e-123
cell-cell contact zone Hs cellular component 411 4.48e-123
extracellular exosome Hs cellular component 404 1.06e-119

GO (InterProScan)

4 results

GO Term Analysis Type e-value
calcium ion binding PRINTS molecular function 1.8E-29
plasma membrane ProSitePatterns cellular component
cell adhesion ProSitePatterns biological process
membrane PRINTS cellular component 1.8E-29