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GENE CARD

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Gene Card

Best human hits

ADAMTS3; SEMA5A; UNC5C

Unique Gene ID

Cirobu.g00004250

Gene Model ID

KH2012:KH.C2.1123

Location

KhC2:5722910..5729640

Transcript Models and Sequences

  KH2012:KH.C2.1123.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Collections

Gateway full ORF

2 results

cien95834

Plate: VES85_P08

cien155412

Plate: VES94_J08

Gene collection 1 (N. Satoh)

1 result

cicl019h08

Plate: R1CiGC10j14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
TSP1_rpt_sf SUPERFAMILY Thrombospondin type-1 (TSP1) repeat superfamily
TSP1_rpt ProSiteProfiles Thrombospondin type-1 (TSP1) repeat
TSP1_rpt SMART Thrombospondin type-1 (TSP1) repeat
TSP1_rpt_sf Gene3D Thrombospondin type-1 (TSP1) repeat superfamily

GOSlim

23 results

GO Term Annotation Origin Type
endopeptidase activity Blast molecular function
metalloendopeptidase activity Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
plasma membrane Blast cellular component
peptidase activity Blast molecular function
metallopeptidase activity Blast molecular function
zinc ion binding Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
cell junction Blast cellular component
neuron projection Blast cellular component
synapse Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
cell surface receptor signaling pathway Blast biological process
transmembrane signaling receptor activity Blast molecular function
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
receptor binding Blast molecular function
extracellular region part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
endopeptidase activity Hs molecular function 56.6 4.03e-08
metalloendopeptidase activity Hs molecular function 56.6 4.03e-08
netrin receptor activity Hs molecular function 55.5 1.02e-07
protein binding Hs molecular function 56.6 4.03e-08
extracellular region Hs cellular component 56.6 4.03e-08
proteinaceous extracellular matrix Hs cellular component 56.6 4.03e-08
extracellular space Hs cellular component 56.6 4.03e-08
plasma membrane Hs cellular component 55.5 1.02e-07
heparin binding Hs molecular function 56.6 4.03e-08
peptidase activity Hs molecular function 56.6 4.03e-08
metallopeptidase activity Hs molecular function 56.6 4.03e-08
zinc ion binding Hs molecular function 56.6 4.03e-08
membrane Hs cellular component 55.5 1.02e-07
integral component of membrane Hs cellular component 55.5 1.02e-07
hydrolase activity Hs molecular function 56.6 4.03e-08
cell junction Hs cellular component 55.5 1.02e-07
semaphorin receptor binding Hs molecular function 53.9 2.75e-07
extracellular matrix Hs cellular component 56.6 4.03e-08
chondroitin sulfate proteoglycan binding Hs molecular function 53.9 2.75e-07
neuropilin binding Hs molecular function 53.9 2.75e-07
neuron projection Hs cellular component 55.5 1.02e-07
heparan sulfate proteoglycan binding Hs molecular function 53.9 2.75e-07
synapse Hs cellular component 55.5 1.02e-07
syndecan binding Hs molecular function 53.9 2.75e-07
metal ion binding Hs molecular function 56.6 4.03e-08
extracellular exosome Hs cellular component 56.6 4.03e-08

GO (InterProScan)

No result

GO Term Analysis Type e-value