Aniseed - Gene card

Gene Card

Best human hits

RPL17; RPL17-C18orf32

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004312

Gene Model ID

KH2012:KH.C2.141

Location

KhC2:1831043..1833919

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000011568
NCBI Reference Sequence	XM_002126784.2
NCBI Reference Sequence	XM_009859276.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl016p24

Plate: R1CiGC10o16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Ribosomal_L22	Pfam	Ribosomal protein L22/L17
Ribosomal_L22/L17_euk/arc	PANTHER	Ribosomal protein L22/L17, eukaryotic/archaeal
Ribosomal_L22	CDD	Ribosomal protein L22/L17
Ribosomal_L22/L17_euk/arc	TIGRFAM	Ribosomal protein L22/L17, eukaryotic/archaeal
Ribosomal_L22/L17_sf	Gene3D	Ribosomal protein L22/L17 superfamily
Ribosomal_L22/L17_sf	SUPERFAMILY	Ribosomal protein L22/L17 superfamily
Ribosomal_L22/L17_CS	ProSitePatterns	Ribosomal protein L22/L17, conserved site

GOSlim

12 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
large ribosomal subunit	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	297	1.30e-104
structural constituent of ribosome	Hs	molecular function	301	1.67e-105
protein binding	Hs	molecular function	297	1.30e-104
intracellular	Hs	cellular component	301	1.67e-105
nucleus	Hs	cellular component	297	1.30e-104
cytosol	Hs	cellular component	297	1.30e-104
ribosome	Hs	cellular component	301	1.67e-105
large ribosomal subunit	Hs	cellular component	301	1.67e-105
cytosolic large ribosomal subunit	Hs	cellular component	297	1.30e-104
intracellular ribonucleoprotein complex	Hs	cellular component	301	1.67e-105

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	2.6E-100
intracellular	ProSitePatterns	cellular component
ribosome	Gene3D	cellular component	2.0E-84
translation	PANTHER	biological process	2.6E-100
large ribosomal subunit	PANTHER	cellular component	2.6E-100