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Gene Card

Best human hits

LDB3; PDLIM1; PDLIM4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004381

Gene Model ID

KH2012:KH.C2.204

Location

KhC2:1484656..1488064

Transcript Models and Sequences

  KH2012:KH.C2.204.v1.A.SL2-1
KH2012:KH.C2.204.v2.A.ND1-1
KH2012:KH.C2.204.v3.A.SL2-2

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XR_001975465.1
Collections

Gene collection 1 (N. Satoh)

3 results

cilv014a15

Plate: R1CiGC26k01

cilv030f21

Plate: R1CiGC27h23

citb088p07

Plate: R1CiGC46n13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
PDZ SMART PDZ domain
PDZ_sf SUPERFAMILY PDZ superfamily
DUF4749 Pfam Domain of unknown function DUF4749
Zasp-like_motif SMART Zasp-like motif
PDZ Pfam PDZ domain
PDZ ProSiteProfiles PDZ domain

GOSlim

36 results

GO Term Annotation Origin Type
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
endosome Blast cellular component
cytoskeleton Blast cellular component
focal adhesion Blast cellular component
cytoskeletal protein binding Blast molecular function
membrane Blast cellular component
lamellipodium Blast cellular component
cell junction Blast cellular component
protein homodimerization activity Blast molecular function
cell projection Blast cellular component
neuron projection Blast cellular component
synapse Blast cellular component
postsynaptic membrane Blast cellular component
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
cytoskeletal part Blast cellular component
protein kinase binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
adherens junction Blast cellular component
enzyme binding Blast molecular function
organelle part Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
plasma membrane region Blast cellular component
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
early endosome Blast cellular component
bounding membrane of organelle Blast cellular component
intracellular organelle lumen Blast cellular component
postsynapse Blast cellular component
cell adhesion molecule binding Blast molecular function
cell adhesion Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
stress fiber Hs cellular component 70.1 2.84e-13
transcription coactivator activity Hs molecular function 70.5 2.31e-13
protein kinase C binding Hs molecular function 79.7 6.31e-16
protein binding Hs molecular function 79.7 6.31e-16
nucleus Hs cellular component 70.1 2.84e-13
transcription factor complex Hs cellular component 70.5 2.31e-13
cytoplasm Hs cellular component 79.7 6.31e-16
endosome Hs cellular component 70.1 2.84e-13
cytoskeleton Hs cellular component 79.7 6.31e-16
cell-cell adherens junction Hs cellular component 70.5 2.31e-13
focal adhesion Hs cellular component 70.5 2.31e-13
cytoskeletal protein binding Hs molecular function 79.7 6.31e-16
membrane Hs cellular component 70.1 2.84e-13
protein phosphatase binding Hs molecular function 70.1 2.84e-13
Z disc Hs cellular component 79.7 6.31e-16
lamellipodium Hs cellular component 70.1 2.84e-13
cell junction Hs cellular component 70.1 2.84e-13
pseudopodium Hs cellular component 79.7 6.31e-16
early endosome membrane Hs cellular component 70.1 2.84e-13
early endosome lumen Hs cellular component 70.1 2.84e-13
filamentous actin Hs cellular component 70.1 2.84e-13
recycling endosome lumen Hs cellular component 70.1 2.84e-13
protein homodimerization activity Hs molecular function 70.1 2.84e-13
cell projection Hs cellular component 79.7 6.31e-16
neuron projection Hs cellular component 70.1 2.84e-13
dendritic spine Hs cellular component 70.1 2.84e-13
synapse Hs cellular component 70.1 2.84e-13
postsynaptic membrane Hs cellular component 70.1 2.84e-13
metal ion binding Hs molecular function 79.7 6.31e-16
perinuclear region of cytoplasm Hs cellular component 79.7 6.31e-16
muscle alpha-actinin binding Hs molecular function 79.7 6.31e-16
alpha-actinin binding Hs molecular function 70.1 2.84e-13
recycling endosome membrane Hs cellular component 70.1 2.84e-13
cadherin binding involved in cell-cell adhesion Hs molecular function 70.5 2.31e-13

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.1E-16

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