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Gene Card

Best human hits

CNGA1; CNGA2; CNGA3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004428

Gene Model ID

KH2012:KH.C2.249

Location

KhC2:2430428..2436941

Transcript Models and Sequences

  KH2012:KH.C2.249.v1.A.ND1-1
KH2012:KH.C2.249.v2.A.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000005017
Collections

Gene collection 1 (N. Satoh)

1 result

citb5h18

Plate: R1CiGC29k04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
cNMP-bd_CS ProSitePatterns Cyclic nucleotide-binding, conserved site
CLZ_dom Pfam Cyclic nucleotide-gated channel, C-terminal leucine zipper domain
cNMP-bd_dom CDD Cyclic nucleotide-binding domain
cNMP-bd_dom SMART Cyclic nucleotide-binding domain
cNMP-bd_dom ProSiteProfiles Cyclic nucleotide-binding domain
CNGA1 PANTHER cGMP-gated cation channel alpha-1
cNMP-bd-like SUPERFAMILY Cyclic nucleotide-binding-like
cNMP-bd_dom Pfam Cyclic nucleotide-binding domain
RmlC-like_jellyroll Gene3D RmlC-like jelly roll fold
Ion_trans_dom Pfam Ion transport domain

GOSlim

35 results

GO Term Annotation Origin Type
Golgi membrane Orthology cellular component
nucleotide binding Orthology molecular function
protein binding Orthology molecular function
calmodulin binding Orthology molecular function
cytoplasm Orthology cellular component
plasma membrane Orthology cellular component
integral component of plasma membrane Orthology cellular component
ion transport Orthology biological process
cation transport Orthology biological process
signal transduction Orthology biological process
visual perception Orthology biological process
protein C-terminus binding Orthology molecular function
membrane Orthology cellular component
integral component of membrane Orthology cellular component
neuronal cell body Orthology cellular component
response to stimulus Orthology biological process
transmembrane transport Orthology biological process
organelle part Orthology cellular component
cell projection part Orthology cellular component
neuron projection Orthology cellular component
macromolecular complex Orthology cellular component
metal ion transport Orthology biological process
monovalent inorganic cation transport Orthology biological process
sensory perception Orthology biological process
G-protein coupled receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
anion binding Orthology molecular function
adenyl ribonucleotide binding Orthology molecular function
guanyl ribonucleotide binding Orthology molecular function
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
bounding membrane of organelle Orthology cellular component
cell projection membrane Orthology cellular component
response to organic substance Orthology biological process

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
Golgi membrane Hs cellular component
nucleotide binding Hs molecular function
photoreceptor outer segment Hs cellular component
ion channel activity Hs molecular function
intracellular cyclic nucleotide activated cation channel activity Hs molecular function
intracellular cGMP activated cation channel activity Hs molecular function
voltage-gated potassium channel activity Hs molecular function
protein binding Hs molecular function
calmodulin binding Hs molecular function
cytoplasm Hs cellular component
plasma membrane Hs cellular component
integral component of plasma membrane Hs cellular component
ion transport Hs biological process
cation transport Hs biological process
signal transduction Hs biological process
visual perception Hs biological process
sensory perception of smell Hs biological process
protein C-terminus binding Hs molecular function
ligand-gated ion channel activity Hs molecular function
membrane Hs cellular component
integral component of membrane Hs cellular component
rhodopsin mediated signaling pathway Hs biological process
regulation of rhodopsin mediated signaling pathway Hs biological process
dendrite Hs cellular component
cAMP binding Hs molecular function
cGMP binding Hs molecular function
Golgi-associated vesicle membrane Hs cellular component
response to magnesium ion Hs biological process
ion transmembrane transport Hs biological process
regulation of membrane potential Hs biological process
photoreceptor outer segment membrane Hs cellular component
neuronal cell body Hs cellular component
perikaryon Hs cellular component
response to stimulus Hs biological process
response to cAMP Hs biological process
transmembrane transport Hs biological process
ciliary membrane Hs cellular component
potassium ion transmembrane transport Hs biological process
cation transmembrane transport Hs biological process
transmembrane transporter complex Hs cellular component

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 720 0.0
nucleotide binding Hs molecular function 720 0.0
photoreceptor outer segment Hs cellular component 702 0.0
ion channel activity Hs molecular function 720 0.0
intracellular cyclic nucleotide activated cation channel activity Hs molecular function 702 0.0
intracellular cGMP activated cation channel activity Hs molecular function 707 0.0
voltage-gated potassium channel activity Hs molecular function 720 0.0
protein binding Hs molecular function 702 0.0
calmodulin binding Hs molecular function 720 0.0
cytoplasm Hs cellular component 707 0.0
plasma membrane Hs cellular component 702 0.0
integral component of plasma membrane Hs cellular component 720 0.0
protein C-terminus binding Hs molecular function 707 0.0
ligand-gated ion channel activity Hs molecular function 707 0.0
membrane Hs cellular component 720 0.0
integral component of membrane Hs cellular component 720 0.0
dendrite Hs cellular component 707 0.0
cAMP binding Hs molecular function 720 0.0
cGMP binding Hs molecular function 707 0.0
Golgi-associated vesicle membrane Hs cellular component 720 0.0
photoreceptor outer segment membrane Hs cellular component 707 0.0
neuronal cell body Hs cellular component 707 0.0
perikaryon Hs cellular component 707 0.0
ciliary membrane Hs cellular component 720 0.0
transmembrane transporter complex Hs cellular component 707 0.0

GO (InterProScan)

7 results

GO Term Analysis Type e-value
ion channel activity Pfam molecular function 2.2E-29
intracellular cyclic nucleotide activated cation channel activity PANTHER molecular function 1.8E-122
ion transport Pfam biological process 2.2E-29
visual perception PANTHER biological process 1.8E-122
membrane Pfam cellular component 2.2E-29
transmembrane transport Pfam biological process 2.2E-29
cation transmembrane transport PANTHER biological process 1.8E-122

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