Aniseed - Gene card

Gene Card

Best human hits

RPS26

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004437

Gene Model ID

KH2012:KH.C2.257

Location

KhC2:513239..515712

Transcript Models and Sequences

External Database Gene Card

External database links

6 results

Database	Gene ID
ENSEMBL	ENSCING00000011628
NCBI Reference Sequence	XM_002131069.3
NCBI Reference Sequence	XM_002131078.2
NCBI Reference Sequence	XM_002131092.2
NCBI Reference Sequence	XM_002131107.2
NCBI Reference Sequence	XM_009859244.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl010c02

Plate: R1CiGC09f05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Ribosomal_S26e_sf	Gene3D	Ribosomal protein S26e superfamily
Ribosomal_S26e	PANTHER	Ribosomal protein S26e
Ribosomal_S26e	Pfam	Ribosomal protein S26e

GOSlim

21 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
RNA splicing	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cell adhesion molecule binding	Orthology	molecular function
endoplasmic reticulum membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
negative regulation of RNA splicing	Hs	biological process
polysomal ribosome	Hs	cellular component
cadherin binding	Hs	molecular function
extracellular exosome	Hs	cellular component
cytoplasmic side of rough endoplasmic reticulum membrane	Hs	cellular component

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	143	1.04e-45
mRNA binding	Hs	molecular function	143	1.04e-45
structural constituent of ribosome	Hs	molecular function	143	1.04e-45
protein binding	Hs	molecular function	143	1.04e-45
intracellular	Hs	cellular component	143	1.04e-45
nucleoplasm	Hs	cellular component	143	1.04e-45
cytoplasm	Hs	cellular component	143	1.04e-45
endoplasmic reticulum	Hs	cellular component	143	1.04e-45
rough endoplasmic reticulum	Hs	cellular component	143	1.04e-45
cytosol	Hs	cellular component	143	1.04e-45
ribosome	Hs	cellular component	143	1.04e-45
small ribosomal subunit	Hs	cellular component	143	1.04e-45
membrane	Hs	cellular component	143	1.04e-45
cytosolic small ribosomal subunit	Hs	cellular component	143	1.04e-45
intracellular ribonucleoprotein complex	Hs	cellular component	143	1.04e-45
polysomal ribosome	Hs	cellular component	143	1.04e-45
cadherin binding	Hs	molecular function	143	1.04e-45
extracellular exosome	Hs	cellular component	143	1.04e-45
cytoplasmic side of rough endoplasmic reticulum membrane	Hs	cellular component	143	1.04e-45

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	4.1E-51
intracellular	PANTHER	cellular component	4.1E-51
ribosome	PANTHER	cellular component	4.1E-51
translation	PANTHER	biological process	4.1E-51