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Gene Card

Best human hits

DDX6; EIF4A1; EIF4A3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004456

Gene Model ID

KH2012:KH.C2.274

Location

KhC2:1116674..1119213

Transcript Models and Sequences

  KH2012:KH.C2.274.v1.A.SL1-1
KH2012:KH.C2.274.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000007421
NCBI Reference Sequence XM_002123271.2
Collections

Gateway full ORF

2 results

cima812522

Plate: VES58_K07

cien182520

Plate: VES98_N10

Gene collection 1 (N. Satoh)

1 result

cieg005j12

Plate: R1CiGC16c02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_C Pfam Helicase, C-terminal
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal

GOSlim

35 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
cytosol Orthology cellular component
translational initiation Blast biological process
spermatogenesis Orthology biological process
regulation of gene expression Orthology biological process
membrane Orthology cellular component
nuclear speck Blast cellular component
hydrolase activity Orthology molecular function
neuronal cell body Blast cellular component
extracellular exosome Blast cellular component
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
cytoplasmic part Orthology cellular component
macromolecular complex Orthology cellular component
cell projection part Orthology cellular component
microtubule Orthology cellular component
plasma membrane region Orthology cellular component
nucleoside-triphosphatase activity Orthology molecular function
RNA metabolic process Orthology biological process
developmental process Orthology biological process
nuclear-transcribed mRNA catabolic process Orthology biological process
cell adhesion molecule binding Orthology molecular function
cell development Orthology biological process
neuron differentiation Orthology biological process
nuclear part Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
heterochromatin Hs cellular component
P-body Hs cellular component
outer dense fiber Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
regulation of translation Hs biological process
spermatogenesis Hs biological process
cytoplasmic stress granule Hs cellular component
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
RISC complex Hs cellular component
hydrolase activity Hs molecular function
stem cell population maintenance Hs biological process
protein domain specific binding Hs molecular function
cytoplasmic mRNA processing body assembly Hs biological process
cytoplasmic ribonucleoprotein granule Hs cellular component
P granule Hs cellular component
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Hs biological process
cadherin binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
sperm annulus Hs cellular component

GO (Blast)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 692 0.0
RNA cap binding Hs molecular function 265 1.17e-84
heterochromatin Hs cellular component 692 0.0
P-body Hs cellular component 692 0.0
outer dense fiber Hs cellular component 692 0.0
nucleic acid binding Hs molecular function 692 0.0
RNA binding Hs molecular function 692 0.0
RNA helicase activity Hs molecular function 692 0.0
double-stranded RNA binding Hs molecular function 265 1.17e-84
mRNA binding Hs molecular function 281 1.45e-90
translation initiation factor activity Hs molecular function 265 1.17e-84
ATP-dependent RNA helicase activity Hs molecular function 692 0.0
helicase activity Hs molecular function 692 0.0
protein binding Hs molecular function 692 0.0
ATP binding Hs molecular function 692 0.0
nucleus Hs cellular component 692 0.0
nucleoplasm Hs cellular component 281 1.45e-90
spliceosomal complex Hs cellular component 281 1.45e-90
nucleolus Hs cellular component 692 0.0
cytoplasm Hs cellular component 692 0.0
mitochondrion Hs cellular component 692 0.0
cytosol Hs cellular component 692 0.0
translation factor activity, RNA binding Hs molecular function 265 1.17e-84
poly(A) binding Hs molecular function 281 1.45e-90
cytoplasmic stress granule Hs cellular component 692 0.0
membrane Hs cellular component 692 0.0
eukaryotic translation initiation factor 4F complex Hs cellular component 265 1.17e-84
RISC complex Hs cellular component 692 0.0
nuclear speck Hs cellular component 281 1.45e-90
hydrolase activity Hs molecular function 692 0.0
protein domain specific binding Hs molecular function 692 0.0
dendrite Hs cellular component 281 1.45e-90
intracellular ribonucleoprotein complex Hs cellular component 281 1.45e-90
exon-exon junction complex Hs cellular component 281 1.45e-90
selenocysteine insertion sequence binding Hs molecular function 281 1.45e-90
RNA stem-loop binding Hs molecular function 281 1.45e-90
cytoplasmic ribonucleoprotein granule Hs cellular component 692 0.0
ribonucleoprotein complex binding Hs molecular function 281 1.45e-90
neuronal cell body Hs cellular component 281 1.45e-90
P granule Hs cellular component 692 0.0
cadherin binding Hs molecular function 692 0.0
extracellular exosome Hs cellular component 265 1.17e-84
catalytic step 2 spliceosome Hs cellular component 281 1.45e-90
sperm annulus Hs cellular component 692 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.4E-43
ATP binding Pfam molecular function 1.4E-43

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