Aniseed - Gene card

Gene Card

Best human hits

RPL10A; RSL1D1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004462

Gene Model ID

KH2012:KH.C2.28

Location

KhC2:7439289..7443249

Transcript Models and Sequences

KH2012:KH.C2.28.v1.A.nonSL1-1
KH2012:KH.C2.28.v2.A.ND4-1
KH2012:KH.C2.28.v2.A.nonSL2-1
KH2012:KH.C2.28.v2.A.nonSL3-1
KH2012:KH.C2.28.v2.A.nonSL5-1
KH2012:KH.C2.28.v2.A.nonSL6-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000000891
NCBI Reference Sequence	XM_002131174.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

ciad017e05

Plate: R1CiGC02f20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Ribosomal_L1/biogenesis	Pfam	Ribosomal protein L1/ribosomal biogenesis protein
Ribosomal_L1_CS	ProSitePatterns	Ribosomal protein L1, conserved site
Ribosomal_L1	PIRSF	Ribosomal protein L1
Ribosomal_L1_3-a/b-sand	Gene3D	Ribosomal protein L1, 3-layer alpha/beta-sandwich
Ribosomal_L1-like	SUPERFAMILY	Ribosomal protein L1-like
Ribosomal_L1/biogenesis	CDD	Ribosomal protein L1/ribosomal biogenesis protein

GOSlim

18 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Blast	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
response to organic substance	Orthology	biological process
macromolecular complex	Blast	cellular component
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
maturation of LSU-rRNA	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
large ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
polysomal ribosome	Hs	cellular component
response to ethanol	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)