Aniseed - Gene card

Gene Card

Best human hits

ZNF385A; ZNF385B; ZNF385D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004518

Gene Model ID

KH2012:KH.C2.33

Location

KhC2:1088182..1096329

Transcript Models and Sequences

KH2012:KH.C2.33.v1.A.SL1-1
KH2012:KH.C2.33.v1.A.SL2-1
KH2012:KH.C2.33.v1.A.SL3-1
KH2012:KH.C2.33.v1.A.SL5-1
KH2012:KH.C2.33.v1.A.SL6-1
KH2012:KH.C2.33.v2.A.SL4-1
KH2012:KH.C2.33.v2.A.SL7-1
KH2012:KH.C2.33.v2.A.SL8-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000007420
ENSEMBL	ENSCING00000011604
NCBI Reference Sequence	XM_002123920.3

Collections

Gene collection 1 (N. Satoh)

1 result

cicl015j04

Plate: R1CiGC10o09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Matrin/U1-like-C_Znf_C2H2	SMART	Matrin/U1-C-like, C2H2-type zinc finger
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_jaz	Pfam	Zinc finger, double-stranded RNA binding

GOSlim

32 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
apoptotic process	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
hemostasis	Orthology	biological process
zinc ion binding	Orthology	molecular function
cell projection	Orthology	cellular component
neuronal cell body	Orthology	cellular component
metal ion binding	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
protein binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
nervous system process	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
immune system process	Orthology	biological process
animal organ development	Orthology	biological process
cell morphogenesis involved in differentiation	Orthology	biological process
cell development	Orthology	biological process
cell differentiation	Orthology	biological process
intracellular signal transduction	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process

GO (Orthology)

34 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear chromatin	Hs	cellular component
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
fibrillar center	Hs	cellular component
p53 binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
regulation of translation	Hs	biological process
apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
hemostasis	Hs	biological process
learning or memory	Hs	biological process
locomotory behavior	Hs	biological process
zinc ion binding	Hs	molecular function
intracellular mRNA localization	Hs	biological process
mRNA localization resulting in posttranscriptional regulation of gene expression	Hs	biological process
platelet formation	Hs	biological process
dendrite	Hs	cellular component
megakaryocyte development	Hs	biological process
cell projection	Hs	cellular component
neuronal cell body	Hs	cellular component
positive regulation of fat cell differentiation	Hs	biological process
metal ion binding	Hs	molecular function
intrinsic apoptotic signaling pathway by p53 class mediator	Hs	biological process
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	Hs	biological process
regulation of cytoplasmic translation	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	61.2	5.39e-10
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	61.2	5.39e-10
fibrillar center	Hs	cellular component	69.7	1.46e-12
p53 binding	Hs	molecular function	69.7	1.46e-12
nucleic acid binding	Hs	molecular function	69.7	1.46e-12
DNA binding	Hs	molecular function	61.2	5.39e-10
RNA binding	Hs	molecular function	69.7	1.46e-12
mRNA 3'-UTR binding	Hs	molecular function	61.2	5.39e-10
nucleus	Hs	cellular component	69.7	1.46e-12
nucleoplasm	Hs	cellular component	61.2	5.39e-10
nucleolus	Hs	cellular component	61.2	5.39e-10
cytoplasm	Hs	cellular component	61.2	5.39e-10
zinc ion binding	Hs	molecular function	69.7	1.46e-12
dendrite	Hs	cellular component	61.2	5.39e-10
cell projection	Hs	cellular component	61.2	5.39e-10
neuronal cell body	Hs	cellular component	61.2	5.39e-10
metal ion binding	Hs	molecular function	69.7	1.46e-12

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	0.18
zinc ion binding	SMART	molecular function	0.18