Aniseed - Gene card

Gene Card

Best human hits

HAGH; LACTB2; PNKD

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004560

Gene Model ID

KH2012:KH.C2.37

Location

KhC2:7247175..7249567

Transcript Models and Sequences

KH2012:KH.C2.37.v1.A.SL1-1
KH2012:KH.C2.37.v1.A.SL2-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_009859438.2

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

3 results

cieg086f09

Plate: R1CiGC40h07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
WH-like_DNA-bd_sf	Gene3D	Winged helix-like DNA-binding domain superfamily
Metallo-B-lactamas	Pfam	Metallo-beta-lactamase
RibonucZ/Hydroxyglut_hydro	Gene3D	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
Metallo-B-lactamas	SMART	Metallo-beta-lactamase

GOSlim

13 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
cytosol	Blast	cellular component
zinc ion binding	Orthology	molecular function
membrane	Blast	cellular component
hydrolase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
extracellular exosome	Blast	cellular component
RNA metabolic process	Orthology	biological process

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
endoribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
zinc ion binding	Hs	molecular function
hydrolase activity	Hs	molecular function
metal ion binding	Hs	molecular function
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	294	6.18e-100
single-stranded RNA binding	Hs	molecular function	294	6.18e-100
hydroxyacylglutathione hydrolase activity	Hs	molecular function	50.1	5.19e-07
nuclease activity	Hs	molecular function	294	6.18e-100
endonuclease activity	Hs	molecular function	294	6.18e-100
endoribonuclease activity	Hs	molecular function	294	6.18e-100
protein binding	Hs	molecular function	294	6.18e-100
nucleus	Hs	cellular component	49.7	8.35e-07
cytoplasm	Hs	cellular component	50.1	5.19e-07
mitochondrion	Hs	cellular component	294	6.18e-100
mitochondrial matrix	Hs	cellular component	294	6.18e-100
cytosol	Hs	cellular component	50.1	5.19e-07
zinc ion binding	Hs	molecular function	294	6.18e-100
membrane	Hs	cellular component	49.7	8.35e-07
hydrolase activity	Hs	molecular function	294	6.18e-100
metal ion binding	Hs	molecular function	294	6.18e-100
extracellular exosome	Hs	cellular component	50.1	5.19e-07

GO (InterProScan)